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2017-12-08Fix AstroPy: Missing Markupsafe (#6630)Axel Huebl1-0/+1
`py-markupsafe` was missing during `spack install` as a build error.
2017-12-08Add: Py-Plotly (#6628)Axel Huebl4-0/+42
* Add: Py-Plotly The requirements of py-plotlit are rather strict fixed to specific versions, so I did not add an "upper versions" `:` to the constrains. See https://github.com/plotly/plotly.py/blob/master/requirements.txt * Py-Requests, Py-Six, Py-Pytz: Older Versions Add two older versions of requests, pytz and six for plotly.
2017-12-08Fix in download url for package libaio (#6616)Paschalis Korosoglou1-1/+1
2017-12-08Update zsh to 5.4.2 (#6609)nshtg1-1/+2
2017-12-08r-tidycensus: Create new package. (#6595)lingnanyuan1-0/+53
2017-12-08r-rgdal: Create new package. (#6593)lingnanyuan1-0/+47
2017-12-08r-tigris: Create new package. (#6591)lingnanyuan1-0/+48
2017-12-08Update openSSL to 1.0.2m/1.1.0g (#6596)nshtg1-2/+4
2017-12-08Update openSSH to 7.6p1 (#6598)nshtg1-1/+2
2017-12-08Update tmux to 2.6 (#6597)nshtg1-1/+2
2017-12-08Updated hash for v1.0 tag of Laghos (#6626)Tzanio Kolev1-1/+1
2017-12-08Package 'openjpeg': set INSTALL_NAME_DIR on MacOS for old versions. (#6603)Sergey Kosukhin2-0/+18
2017-12-08r-rhtslib: added build dependency on autoconf (#6627)Paschalis Korosoglou1-0/+1
2017-12-08py-cogent: Create new package (#6624)Eric1-0/+37
2017-12-08dealii: update boost dependency (#6586)Denis Davydov2-22/+57
(i) blacklst 1.65.0 due to issues on Ubuntu with gcc 5.4.0 (ii) add a patch for 1.65.1 to fix serialization (iii) simplify boost's depends_on()
2017-12-08py-htseq: Create new package. (#6623)lingnanyuan1-0/+42
2017-12-08Candle benchmarks update (#6619)Brian Van Essen1-0/+1
Added a dependency on HDF5 support for the CANDLE benchmarks.
2017-12-08Adding openssl dependency to xrootd. Closes #6601 (#6618)Benedikt Riedel1-0/+1
2017-12-08Update vim to 8.0.1376 (#6599)nshtg1-1/+2
2017-12-08subread: Add version 1.6.0 (#6615)Eric1-0/+1
2017-12-08qrupdate: fix blas/lapack and compilation of macOS (#6614)Denis Davydov1-2/+27
2017-12-08py-reportlab: Create new package (#6612)Eric1-0/+35
2017-12-08Update fish to 2.7.0 (#6608)nshtg1-3/+4
2017-12-08bedtools2: Add version 2.27.0 (#6606)Eric1-0/+1
2017-12-08Provide a patch to allow hdf5@1.10.1 to build with intel/18.0.1. (#6583)Kelly (KT) Thompson2-0/+22
This is known issue. See: https://software.intel.com/en-us/forums/intel-fortran-compiler-for-linux-and-mac-os-x/topic/747951.
2017-12-08Update for 'eccodes'. (#6604)Sergey Kosukhin4-22/+96
2017-12-08Update for 'grib-api'. (#6605)Sergey Kosukhin5-25/+181
2017-12-08Update openfast package to explicity pass MPI implementation during cmake ↵Jon Rood1-0/+3
configure. (#6590)
2017-12-07wxWidgets: Fix builds (#6560)Axel Huebl2-1/+15
- depends on GTK+ with X enabled (btw, non-X backends are deprecated/removed in GTK+) - patch for 3.0.1-3.0.2: missing include caused multiple `error: call of overloaded ‘abs(XYPOSITION)’ is ambiguous` (seen in GCC 6.3.0); fixed in 3.0.3+
2017-12-06r-pathview: Create new package. (#6582)lingnanyuan1-0/+51
2017-12-06r-kegggraph: Create new package. (#6580)lingnanyuan1-0/+43
2017-12-06r-org-hs-eg-db: Create new package. (#6581)lingnanyuan1-0/+38
2017-12-06Package 'libszip': update checksum and list_depth. (#6587)Sergey Kosukhin1-2/+2
2017-12-06picard: Add version 2.16.0 (#6579)Eric1-0/+1
2017-12-06mrbayes: url now points to github + removed the deprecated sourceforge url ↵Audrey Thoma1-4/+3
(#6578)
2017-12-05Update CGNS and add CGNS capability to Trilinos (#6568)Jon Rood2-18/+55
* Update CGNS to be able to be used in Trilinos. * Updating Trilinos to be able to use CGNS. * Fixing wrong cmake defines in trilinos for enabling cgns and cleaning up cgns package. * Changing cgns parallel variant to mpi. Removing explicit dependence on parallel-netcdf in trilinos.
2017-12-05Update gnupg to 2.2.3 (#6573)nshtg4-4/+8
Updated dependencies: * libassuan 2.4.5 * libgcrypt 1.8.1 * npth 1.5
2017-12-05Add Maintainer (#6575)Axel Huebl14-0/+14
Add myself as maintainer to the packages we contributed and/or maintain the mainline from.
2017-12-05Add opennurbs package (#6570)Jon Rood1-0/+75
* Adding OpenNurbs package. * Fixing flake8 error. * Removing unused os import from opennurbs.
2017-12-05ADIOS 1.13.0: LZ4 & blosc support (#6572)Axel Huebl1-1/+16
Add additional transform libraries to ADIOS. Also modifies existing transforms to the versions they were introduced (otherwise this was resulting in unknown configure flags).
2017-12-05ADIOS 1.13.0: Newer SZ Versions (#6561)Axel Huebl1-1/+2
The latest release of ADIOS needs a newer version of SZ due to an upstream library naming change.
2017-12-05c-blosc: 1.12.1 (#6571)Axel Huebl1-0/+9
Adds a newer release of c-blosc, adds the new flags for external library builds, adds missing dependencies.
2017-12-04OpenJPEG: all version tuples have the same length. (#6526)Sergey Kosukhin1-4/+23
2017-12-04Added package r version 3.4.3 (#6565)Paschalis Korosoglou1-1/+2
2017-12-04libpng: CPPFLAGS for -I (#6563)Axel Huebl1-1/+1
Recent versions of `libpng` (e.g. 1.6.34) warn/abort that includes for `zlib` need to be passed properly via `CPPFLAGS`. This fixes it.
2017-12-04bamtools: Add version 2.5.0 (#6553)Eric1-0/+1
2017-12-04dealii: add scalapack and various cleanups (#6552)Denis Davydov3-72/+81
2017-12-04py-h5py: fixed a typo in the name of a dependency (#6540)Chien-Chang Feng1-1/+1
2017-12-03 Adding zlib dependence to xrootd to resolve #6545 (#6550)Benedikt Riedel1-0/+1
2017-12-03py-multiqc: Add version 1.3 (#6554)Eric1-0/+1