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2023-09-11elpa: Add --enable-scalapack-tests to configure when +autotune (#39728)Tom Payerle1-0/+2
When building elpa +autotune, we apparently need to add the configure option --enable-scalapack-tests
2023-09-11celeritas: add v0.3.2 (#39879)Seth R. Johnson1-0/+1
2023-09-11sirius: fix cuda_arch flags (#39889)Simon Pintarelli1-1/+3
2023-09-11w3emc: add develop version and more variants (#39884)Alex Richert1-6/+37
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-09-11acfl: map rocky9 to RHEL-9 (#39892)Annop Wongwathanarat1-0/+1
2023-09-11sp: add develop version, build precision, and OpenMP support (#39874)Alex Richert1-3/+21
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-11Garfield++: Add the patch to fix the missing headers and Set the environment ↵Tao Lin1-1/+25
variable HEED_DATABASE (#39904)
2023-09-11likwid: search library path for compilation with hwloc (#39659)Thomas Gruber1-6/+12
2023-09-11openfoam-org: zoltan renumbering and decompsition (#39915)kjrstory1-0/+20
2023-09-11transdecoder: add 5.7.1 (#39916)George Young1-0/+1
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-11gffcompare: new package @0.12.6 (#39917)George Young1-0/+26
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-11wrf: fix patches for 4.2 to 4.4.2 for aarch64 config (#39900)Annop Wongwathanarat6-27/+258
2023-09-11intel-oneapi-mkl: hpcx-mpi support (#39750)Robert Cohn1-3/+8
2023-09-11DisCoTec: add new package (#35239)Freifrau von Bleifrei1-0/+50
Co-authored-by: Alexander Van Craen <40516079+vancraar@users.noreply.github.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-09-10singularity: fix package name in comment (#39822)Adam Fidel1-1/+1
2023-09-10Update package H5Z-ZFP to 1.1.1 (#39740)Mark (he/his) C. Miller1-1/+10
* update to 1.1.1 * add maintainers * add 1.1.0; set default
2023-09-10spglib: add v2.1.0 (#39910)Rocco Meli1-0/+1
* ensure umpire~cuda~rocm when ~cuda~rocm * update spglib
2023-09-08root: add latest available tag (#39895)Thomas Madlener1-0/+1
2023-09-08veloc: add v1.7 (#39465)eugeneswalker1-22/+12
* updates for VELOC 1.6 * veloc: add v1.7 --------- Co-authored-by: Bogdan Nicolae <bogdan.nicolae@acm.org>
2023-09-08Cloverleaf-ref: proposal for a -ref version only (#39894)AMD Toolchain Support1-0/+114
* Cloverleaf-ref: proposal for a -ref version only * Cloverleaf-ref: fixing typo. --------- Co-authored-by: fpanichi <fpanichi@amd.com>
2023-09-08BUILD_TESTING is a CMake variable and should not be scoped (#39866)Anton Kozhevnikov1-1/+1
2023-09-08Speed-up `spack external find` execution (#39843)Massimiliano Culpo1-3/+3
* Perform external spec detection with multiple workers The logic to perform external spec detection has been refactored into classes. These classes use the GoF "template" pattern to account for the small differences between searching for "executables" and for "libraries", while unifying the larger part of the algorithm. A ProcessPoolExecutor is used to parallelize the work. * Speed-up external find by tagging detectable packages automatically Querying packages by tag is much faster than inspecting the repository, since tags are cached. This commit adds a "detectable" tag to every package that implements the detection protocol, and external detection uses it to search for packages. * Pass package names instead of package classes to workers The slowest part of the search is importing the Python modules associated with candidate packages. The import is done serially before we distribute the work to the pool of executors. This commit pushes the import of the Python module to the job performed by the workers, and passes just the name of the packages to the executors. In this way imports can be done in parallel. * Rework unit-tests for Windows Some unit tests were doing a full e2e run of a command just to check a input handling. Make the test more focused by just stressing a specific function. Mark as xfailed 2 tests on Windows, that will be fixed by a PR in the queue. The tests are failing because we monkeypatch internals in the parent process, but the monkeypatching is not done in the "spawned" child process.
2023-09-08crosstool-ng: add new package (#39865)Massimiliano Culpo2-0/+51
2023-09-07epics-base package: use the Spack compiler wrappers (#39752)eflumerf1-0/+4
Edit configuration file to use the Spack compiler wrappers.
2023-09-07Make Cabana a Cuda/ROCm package (matching ArborX) (#39809)Sam Reeve1-1/+16
2023-09-07Allow to build latest released version of CP2K with CMake (#39782)Rocco Meli1-9/+4
* allow to build latest version of cp2k with cmake * apply black
2023-09-07neko: add v0.6.1 and fix package (#39751)Niclas Jansson1-0/+5
* neko: add v0.6.1 and fix package * Change to a conditional variant for gslib
2023-09-07add SUNDIALS v6.6.1 (#39853)David Gardner1-0/+1
2023-09-07Automated deployment to update package flux-core 2023-09-07 (#39856)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-09-07Automated deployment to update package flux-security 2023-09-07 (#39855)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-09-07move determine_number_of_jobs into spack.util.cpus, use it in concretize ↵Harmen Stoppels3-3/+0
(#37620)
2023-09-07lua: unzip also required during build (#39802)Martin Aumüller1-1/+1
Unzip required during build otherwise configuration of luarocks fails during installation of lua@5.3.6 on ubuntu 22.04 w/o system unzip.
2023-09-07r-furrr: Add furrr R package. (#39814)Johann Gaebler1-0/+48
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-07r-functional: Add the functional R package. (#39826)Johann Gaebler1-0/+21
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-07Add Figcone Package (#39804)Matheus Henrique1-0/+16
* Add Figcone Package * Fix the style * add url * fix style removing whitespace of a blanck line * remove versions
2023-09-07duckdb: add v0.8.1 (#39851)Geoffrey Lentner1-1/+2
2023-09-07r-tinytiger: Add tinytiger R package. (#39828)Johann Gaebler1-0/+33
* r-tinytiger: Add tinytiger R package. * Fix homepage. --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-09-06seacas: Set TPL_ENABLE_Pthread=ON when +thread_safe (#39703)Tom Payerle1-0/+2
* seacas: Set TPL_ENABLE_Pthread=ON when +thread_safe This should fix #39702 Basically, following suggestion of error message and setting TPL_ENABLE_Pthread to the value of the boolean spack variant thread_safe * seacas: Fix style issue Add space after comment #
2023-09-06cgns: Add -fPIC to Fortan/C compilation flags (#39700)Tom Payerle1-0/+4
* cgns: Add -fPIC to Fortan/C compilation flags This should fix #39699 * cgns: Add -fPIC compilation flags when +fortran Incorporating suggestions of @aumuell with addition of making +pic required when +fortran
2023-09-06xyce: add version 7.7.0 and specialize patch (#39696)Paul Kuberry2-40/+6
2023-09-06Use correct hash for 3.0 (#39743)Brian Vanderwende1-1/+1
2023-09-06Eigen: Fix patch URL (#39746)Rémi Lacroix1-2/+2
2023-09-06Add libpostal Package (#39758)Johann Gaebler1-0/+44
* Add libpostal. * Add back Spack license.
2023-09-06r-sets: Add R `sets` package (#39760)Johann Gaebler1-0/+54
* r-sets: Add r-sets. * r-sets: Fix R dependency for first version. * r-sets: Remove package versions for which a compatible version of R cannot be installed.
2023-09-06r-humaniformat: Add R `humaniformat` package (#39761)Johann Gaebler1-0/+26
* r-humaniformat: Add r-humaniformat. * r-humaniformat: Remove blank line at end of file. * Fix broken link in description.
2023-09-06new damaris package updated to use Daamris v.1.9.0 and including py-mpi4py ↵Josh Bowden1-17/+19
dependency when +python specified (#39774)
2023-09-06sirius: simplify hip architectures, fix umpire dependency (#39776)Simon Pintarelli1-8/+2
2023-09-06openfoam-org: add variant scotch (#39841)kjrstory1-3/+4
2023-09-06musl: bump (#39838)Harmen Stoppels1-0/+1
2023-09-06FFTX: replace extends with variants (#39701)Patrick Broderick7-55/+125
The spiral-software package had a number of extensions, but does not work unless they actually exist in the spiral software prefix (creating a view is not sufficient). With the removal of "spack activate" (different from "spack env activate"), a new approach is needed to support optional components of `spiral-software` . This commit updates the spiral-software package to copy the dependency installations into its own prefix. This commit also adds versions for `fftx` and `spiral-software`, as well as an optional `spiral-software-jit` package.
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