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* updating the recipe for betterment
* addressing the suggesions received from reviewers
* adding package helper macros
Co-authored-by: mohan002 <mohbabul@amd.com>
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* Qt fixes for a Cray AMD system.
* Update to latest changes.
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context manager (#26700)
Using the Spec.constrain method doesn't work since it might
trigger a repository lookup which could break our directives
and triggers a circular import error.
To fix that we introduce a function to merge abstract anonymous
specs, based only on package names, which does not perform any
lookup in the repository.
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Add missing pkgconfig to openslide and its dep perl-alien-libxml2.
Fix shared-mime-info to be a runtime dependency of gdk-pixbuf,
Otherwise, configure cannot detect use gdk-pixbuf without error.
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boost@1.76.0 [or lower] (#26709)
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Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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To build with gcc-11, v4.9.3 is needed, conflict added for older revs.
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Co-authored-by: Sinan <sbulutw@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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vapor needs proj@:7 and gives a list of tested dependency versions.
Make it find the numpy include path and add version 3.5.0 as well
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Use depends_on('cgal@4.7: +core') to fix the build
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The network capture tests can't pass when built as normal user.
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* SEACAS: add a Faodel variant
* Use safer CMake and variant packages instead of directly adding parameters
Add a "+faodel ~mpi" dependency to balance "+faodel +mpi"
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The buildcache is now extracted in a temporary folder within the current store,
moved to its final place and relocated.
"spack clean -s" has been extended to also clean the temporary extraction directory.
Add hardlinks with absolute paths for libraries in the corge, garply and quux packages
to detect incorrect handling of hardlinks in tests.
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Co-authored-by: Sid Pendelberry <sid@rit.edu>
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ppc64_sse.patch can only be applied to 1.9.4:
* Older releases don't have the patched file
* All newer releases carry the change of the patch already.
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Adds new packages for using MEDCoupling from SALOME platform
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Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
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Libical needs pkgconfig, glib and libxml2 to build.
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gcc-11 does not include the <limits> and <algorithm> as side effect
of including other header, at least not as often as earlier gcc did.
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Problem: Flux expects the `FLUX_PMI_LIBRARY_PATH` to point directly at
the `libpmi.so` installed by Flux. When the env var is unset,
prepending to it results in this behavior. In the rare case that the
env var is already set, then the spack `libpmi.so` gets prepended with a
`:`, which Flux then attempts to interpret as a single path.
Solution: don't prepend to the path, instead set the path to point to
the `libpmi.so` (which will be undone when Flux is unloaded).
* flux-core: remove deprecated environment variables
The earliest checksummed version in this package is 0.15.0. As of
0.12.0, wreck (and its associated paths) no longer exist in Flux. As of
0.13.0, the `FLUX_RCX_PATH` variables are no longer used. So clean up
these env vars from the `setup_run_environment`.
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gromacs@2018:2020.6 is fixed to build with gcc@11.2.0
by adding #include <limits> to a few header files.
Thanks to Maciej Wójcik <w8jcik@gmail.com> for testing versions.
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There was a bug in 2.36.* of missing Makefile dependencies. The
previous workaround was to require 2.36 to be built serially. This is
now fixed upstream in 2.37 and this PR adds the patch to restore
parallel make to 2.36.
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* py-niworkflows: add new package
* Update var/spack/repos/builtin/packages/py-niworkflows/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove unnecessary comment
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-nistats: add new package
* Update var/spack/repos/builtin/packages/py-nistats/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove `conflicts`
* remove test dependencies
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Make python 2 use 'from __future__ import absolute_import' to allow import spack.pkgkit
* Add Spack
* Improve ranges
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* packages/phist, re #26002: force phist to use MPI compiler wrappers (copied from trilinos package)
* packages/phist re #26002, use cmake-provded FindMPI module only
* packages/phist source code formatting
* packages/phist: set MPI_HOME rather than MPI_BASE_DIR, thanks @sethri.
* phist: delete own FindMPI.cmake for older versions (rather than patching it away)
* packages/phist: remove blank line
* phist: adjust sorting of imports
* phist: change order of imports
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1.16 and 1.16.1 are not compatible with LLVM 13
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for root (#26677)
The ASP-based solver maximizes the number of values in multi-valued
variants (if other higher order constraints are met), to avoid cases
where only a subset of the values that have been specified on the
command line or imposed by another constraint are selected.
Here we swap the priority of this optimization target with the
selection of the default providers, to avoid unexpected results
like the one in #26598
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Fix missing declaration of uintptr_t with glibc>=2.17 in 1.53:1.54
See: https://bugs.gentoo.org/482372
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* py-templateflow: add 0.4.2
* py-templateflow: fix python dependency for 0.4.2
* py-templateflow: remove wheel dependency for older versions
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