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2022-11-15zfp: update for version 1.0.0 (#33452)Garrett Morrison2-32/+71
* zfp: updates and many fixes for version 1.0.0 Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-15xsdk: add version @0.8.0 (#33794)Satish Balay1-9/+92
- enable sundials+magma+ginkgo - enable dealii+sundials - disable dealii~cgal due to build errors - enable petsc+rocm - enable slepc+cuda+rocm - enable strumpack+cuda+slate - enable slate build with non-gcc compilers - enable pumi+shared - enable mfem+shared - enable ginkgo+mpi - add hiop - and exago - use exago~ipopt due to mumps~mpi conflict with mpi.h) - add raja variant [used by exago/hiop] ~raja builds exago in pflow-only mode - i.e exago~hiop~ipopt~python~cuda ^hiop~cuda [Default on MacOS] Co-authored-by: Cody Balos <balos1@llnl.gov>
2022-11-15Update BML versions list in package.py (#33920)Jean-Luc Fattebert1-10/+18
* Update BML versions list in package.py * Update package.py
2022-11-15spectre: add v2022.11.15 (#33921)SXS Bot1-0/+3
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-11-15meson: add new version 0.64.0 (#33880)Erik Schnetter2-2/+16
2022-11-15New Package: Prime95/Mprime (#33895)Saqib Khan1-0/+35
* New Package: Prime95/Mprime * Fix trailing whitespaces in prime95 * Fix checksum for prime95 Signed-off-by: saqibkh <saqibkhan@utexas.edu>
2022-11-15Add v0.8 to Arbor (#33916)Brent Huisman1-5/+14
2022-11-15nsimd: Update Python requirements (#33879)Erik Schnetter1-1/+5
We need Python 3.0:3.9
2022-11-15thepeg: make rivet dependency optional... (#33912)iarspider1-3/+17
* thepeg: make rivet dependency optional... * add "libs" variant, move compiler flags to flag_handler Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-11-15Fix incorrect timer (#33900)Harmen Stoppels1-5/+0
Revamp the timer so we always have a designated begin and end. Fix a bug where the phase timer was stopped before the phase started, resulting in incorrect timing reports in timers.json.
2022-11-15glib: add missing libelf dep (#33894)Harmen Stoppels1-1/+3
2022-11-15openssh: add libxcrypt (#33892)Harmen Stoppels1-0/+1
2022-11-15python: missing libxcrypt dep (#33847)Harmen Stoppels1-0/+16
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-15Revert "fix perl libxcrypt.so dep (#33846)" (#33909)Jonathon Anderson1-1/+0
This reverts commit bf1b2a828c61fb465f7641b6230fef4f17867162, as libxcrypt's configure script requires Perl, leading to a circular dependency.
2022-11-15mochi-margo: add v0.11 (#33910)Matthieu Dorier1-0/+1
2022-11-14[py-pmw-patched] needs setuptools to build (#33902)Stephen Sachs1-0/+3
Error message: ``` ModuleNotFoundError: No module named 'setuptools' ``` Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-14swig: needs zlib (#33890)Harmen Stoppels1-0/+1
2022-11-14Ginkgo 1.5.0 version, new MPI variant, related fixes (#33838)Terry Cojean4-9/+46
* Ginkgo 1.5.0 release, new MPI variant * Fix ROCTHRUST/ROCPRIM issues * Fix deal.II issue with Ginkgo 1.5.0 * Also fix hipRAND+rocRAND RPATH settings * Turn off CCACHE for spack builds. Co-authored-by: Veselin Dobrev <dobrev@llnl.gov> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-11-14Alquimia: tweak for building xsdk v0.8.0 with ROCm/HIP (#33881)Veselin Dobrev1-0/+9
2022-11-14superlu-dist: add version 8.1.2 (#33868)Satish Balay1-0/+1
2022-11-14fix perl libxcrypt.so dep (#33846)Harmen Stoppels1-0/+1
Detected using https://github.com/spack/spack/pull/28109
2022-11-14hdf4: fix build on Apple M1 (#33740)Dom Heinzeller2-0/+13
2022-11-14util-linux: fix deps (#33893)Harmen Stoppels1-0/+2
2022-11-14Remove support for running with Python 2.7 (#33063)Massimiliano Culpo1-2/+2
* Remove CI jobs related to Python 2.7 * Remove Python 2.7 specific code from Spack core * Remove externals for Python 2 only * Remove llnl.util.compat
2022-11-14libxcrypt: 4.4.31 (#33885)Harmen Stoppels1-0/+1
2022-11-14Speed up traverse unit tests (#33840)Harmen Stoppels4-129/+0
2022-11-13[plasma] add support for building with 'cray-libsci' (#33869)adelie-v0.19.0Veselin Dobrev1-0/+19
2022-11-13tau: checksum (#33873)Harmen Stoppels1-1/+1
2022-11-13GDAL: add v3.6.0 (#33856)Adam J. Stewart3-4/+54
* GDAL: add v3.6.0 * Explicitly control BASISU * More reasonable variant defaults
2022-11-13py-pytorch-lightning: add v1.8.1 (#33854)Adam J. Stewart1-1/+2
2022-11-13[sundials] fix cmake argument generation for '+magma' (#33858)Veselin Dobrev2-2/+5
[dealii] force cmake to accept Scalapack settings from Spack
2022-11-12py-vermin: add latest version 1.5.1 (#33861)Morten Kristensen1-1/+2
2022-11-11Update ExaGO for 1.5.0 release. (#33853)Cameron Rutherford1-15/+23
* Update ExaGO for 1.5.0 release
2022-11-11magma: add version 2.7.0 (#33814)Satish Balay1-5/+2
* magma: add version 2.7.0 Co-authored-by: Stan Tomov <tomov@icl.utk.edu>
2022-11-11[mfem] add a patch to fix some issues with building with ROCm (#33810)Veselin Dobrev3-9/+38
2022-11-11libxcrypt: 4.4.30 (#33845)Harmen Stoppels2-5/+43
* libxcrypt: 4.4.30 * libxcrypt.so.2 by default * add libs prop, since libxcrypt provides libcrypt
2022-11-11ParaView: Add variant for VisItBridge (#33783)kwryankrattiger1-1/+9
* ParaView: Add variant for VisItBridge * ParaView: Add kwryankrattiger has package maintainer
2022-11-11xsdk: update maintainers (#33822)Satish Balay2-2/+2
2022-11-11trilinos: add version 13.4.1 (#33533)Satish Balay1-1/+3
And update dependency on superlu-dist (now works with @8)
2022-11-11remove activate/deactivate support in favor of environments (#29317)Harmen Stoppels2-129/+1
Environments and environment views have taken over the role of `spack activate/deactivate`, and we should deprecate these commands for several reasons: - Global activation is a really poor idea: - Install prefixes should be immutable; since they can have multiple, unrelated dependents; see below - Added complexity elsewhere: verification of installations, tarballs for build caches, creation of environment views of packages with unrelated extensions "globally activated"... by removing the feature, it gets easier for people to contribute, and we'd end up with fewer bugs due to edge cases. - Environment accomplish the same thing for non-global "activation" i.e. `spack view`, but better. Also we write in the docs: ``` However, Spack global activations have two potential drawbacks: #. Activated packages that involve compiled C extensions may still need their dependencies to be loaded manually. For example, ``spack load openblas`` might be required to make ``py-numpy`` work. #. Global activations "break" a core feature of Spack, which is that multiple versions of a package can co-exist side-by-side. For example, suppose you wish to run a Python package in two different environments but the same basic Python --- one with ``py-numpy@1.7`` and one with ``py-numpy@1.8``. Spack extensions will not support this potential debugging use case. ``` Now that environments are established and views can take over the role of activation non-destructively, we can remove global activation/deactivation.
2022-11-10Fixed a bug where the external HIP library is found in a nested directory, ↵Brian Van Essen1-1/+6
even on newer releases of ROCm. (#33772)
2022-11-11emacs: Add version 28.2 (#33255)Pranith1-0/+1
2022-11-11global: add --with-ncurses with prefix to configure (#33136)Yang Zongze2-5/+18
2022-11-11go-bootstrap: improve error message for Monterey (#31800)Seth R. Johnson1-1/+5
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-11-10redis-plus-plus: added initial support (#33803)Loïc Pottier1-0/+54
* redis-plus-plus: added initial support * redis-plus-plus: use cmake arg provided by Spack * redis-plus-plus: oups tiny typo Signed-off-by: Loïc Pottier <pottier1@llnl.gov> Signed-off-by: Loïc Pottier <lpottier@arnor> Co-authored-by: Loïc Pottier <lpottier@arnor>
2022-11-11Delete directory with vestigial configuration file (#33825)Massimiliano Culpo1-40/+0
2022-11-10adding sha for 7.0 release (#33823)MatthewLieber1-1/+2
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2022-11-10xsdk: deprecate 0.6.0, and remove older deprecated releases (#33815)Satish Balay2-97/+7
xsdk-examples: deprecate @0.2.0, remove @0.1.0 in sync with older xsdk releases
2022-11-10Cran updates (#33819)Glenn Johnson124-14/+333
* add version 1.7-20 to r-ade4 * add version 1.1-13 to r-adephylo * add version 0.3-20 to r-adespatial * add version 1.2-0 to r-afex * add version 0.8-19 to r-amap * add version 0.1.8 to r-aplot * add version 2.0.8 to r-biasedurn * add version 2.4-4 to r-bio3d * add version 1.30.19 to r-biocmanager * add version 1.2-9 to r-brobdingnag * add version 0.4.1 to r-bslib * add version 3.7.3 to r-callr * add version 3.1-1 to r-car * add version 0.3-62 to r-clue * add version 1.2.0 to r-colourpicker * add version 1.8.1 to r-commonmark * add version 0.4.3 to r-cpp11 * add version 1.14.4 to r-data-table * add version 1.34 to r-desolve * add version 2.4.5 to r-devtools * add version 0.6.30 to r-digest * add version 0.26 to r-dt * add version 1.7-12 to r-e1071 * add version 1.8.2 to r-emmeans * add version 1.1.16 to r-exomedepth * add version 0.1-8 to r-expint * add version 0.4.0 to r-fontawesome * add version 1.5-2 to r-fracdiff * add version 1.10.0 to r-future-apply * add version 3.0.1 to r-ggmap * add version 3.4.0 to r-ggplot2 * add version 2.1.0 to r-ggraph * add version 0.6.4 to r-ggsignif * add version 0.6-7 to r-gmp * add version 2022.10-2 to r-gparotation * add version 0.8.3 to r-graphlayouts * add version 1.8.8 to r-grbase * add version 2.1-0 to r-gstat * add version 0.18.6 to r-insight * add version 1.3.1 to r-irkernel * add version 1.8.3 to r-jsonlite * add version 1.7.0 to r-lava * add version 1.1-31 to r-lme4 * add version 5.6.17 to r-lpsolve * add version 5.5.2.0-17.9 to r-lpsolveapi * add version 1.2.9 to r-mapproj * add version 3.4.1 to r-maps * add version 1.1-5 to r-maptools * add version 1.3 to r-markdown * add version 6.0.0 to r-mclust * add version 4.2-2 to r-memuse * add version 1.8-41 to r-mgcv * add version 1.2.5 to r-minqa * add version 0.3.7 to r-nanotime * add version 2.4.1.1 to r-nfactors * add version 3.1-160 to r-nlme * add version 2.7-1 to r-nmof * add version 0.60-16 to r-np * add version 2.0.4 to r-openssl * add version 4.2.5.1 to r-openxlsx * add version 0.3-8 to r-pbdzmq * add version 2.0-3 to r-pcapp * add version 0.7.0 to r-philentropy * add version 2.0.3 to r-pkgcache * add version 1.3.1 to r-pkgload * add version 1.10-4 to r-polyclip * add version 3.8.0 to r-processx * add version 1.7.2 to r-ps * add version 2.12.1 to r-r-utils * add version 1.2.4 to r-ragg * add version 3.7 to r-rainbow * add version 0.0.20 to r-rcppannoy * add version 0.3.3.9.3 to r-rcppeigen * add version 0.3.12 to r-rcppgsl * add version 1.0.2 to r-recipes * add version 1.1.10 to r-rmutil * add version 0.10.24 to r-rmysql * add version 2.4.8 to r-rnexml * add version 4.1.19 to r-rpart * add version 1.7-2 to r-rrcov * add version 0.8.28 to r-rsconnect * add version 0.25 to r-servr * add version 1.7.3 to r-shiny * add version 3.0-0 to r-spatstat-data * add version 3.0-3 to r-spatstat-geom * add version 3.0-1 to r-spatstat-random * add version 3.0-0 to r-spatstat-sparse * add version 3.0-1 to r-spatstat-utils * add version 1.8.0 to r-styler * add version 3.4.1 to r-sys * add version 1.5-2 to r-tclust * add version 0.0.9 to r-tfmpvalue * add version 1.2.0 to r-tidyselect * add version 0.10-52 to r-tseries * add version 4.2.2 to r-v8 * add version 0.5.0 to r-vctrs * add version 2.6-4 to r-vegan * add version 0.7.0 to r-wk * add version 0.34 to r-xfun * add version 1.0.6 to r-xlconnect * add version 3.99-0.12 to r-xml * add version 0.12.2 to r-xts * add version 1.0-33 to r-yaimpute * add version 2.3.6 to r-yaml * add version 2.2.2 to r-zip * add version 2.2-7 to r-deoptim * add version 4.3.1 to r-ergm * add version 0.18 to r-evaluate * add version 1.29.0 to r-future * add version 0.0.8 to r-ggfun * add version 0.9.2 to r-ggrepel * add version 1.9.0 to r-lubridate * add version 4.10.1 to r-plotly * add version 0.2.12 to r-rcppcctz * add version 1.2 to r-rook * add version 1.6-1 to r-segmented * add version 4.2.1 to r-seurat * add version 4.1.3 to r-seuratobject * add version 1.0-9 to r-sf * add version 1.5-1 to r-sp * add version 1.8.1 to r-styler * new package: r-timechange * new package: r-stars * new package: r-sftime * new package: r-spatstat-explore Co-authored-by: glennpj <glennpj@users.noreply.github.com>
2022-11-10pandoc: add version 2.19.2 (#33811)Rémi Lacroix1-0/+9