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2024-11-11butterflypack: add v3.2.0, strumpack: add v8.0.0 (#47462)Satish Balay2-3/+7
* butterflypack: add v3.2.0 * strumpack: add v8.0.0 * restrict fj patch to @1.2.0 * Update var/spack/repos/builtin/packages/butterflypack/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-11-11py-oracledb: add v1.4.2, v2.3.0, v2.4.1 (#47313)v1-4/+10
the py-oracledb package only has a single outdated version available in its recipe. this PR adds a much broader range of versions and their corresponding checksums. * add more versions of py-oracledb * update py-oracledb recipe * add py-cython version dependencies * tweak py-cython version dependencies * remove older versions of py-oracledb
2024-11-11petsc: use --with-exodusii-dir [as exodus does not have 'libs()' to provide ↵Satish Balay1-1/+4
value for --with-exodusii-lib] (#47506)
2024-11-11vbfnlo: add v3.0; depends on tcsh (build) (#47532)Wouter Deconinck1-1/+3
* vbfnlo: depends on tcsh (build) * vbfnlo: add v3.0 * vbfnlo: comment Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch> --------- Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2024-11-11py-gosam: add v2.1.2 (#47533)Wouter Deconinck1-0/+5
2024-11-11ut: add 2.1.0 and 2.1.1 (#47538)Mikael Simberg1-0/+2
2024-11-11llvm: filter clang-ocl from the executables being probed (#47536)Massimiliano Culpo1-1/+1
This filters any selected executable ending with `-ocl` from the list of executables being probed as candidate for external `llvm` installations. I couldn't reproduce the entire issue, but with a simple script: ``` #!/bin/bash touch foo.o echo "clang version 10.0.0-4ubuntu1 " echo "Target: x86_64-pc-linux-gnu" echo "Thread model: posix" echo "InstalledDir: /usr/bin" exit 0 ``` I noticed the executable was still probed: ``` $ spack -d compiler find /tmp/ocl [ ... ] ==> [2024-11-11-08:38:41.933618] '/tmp/ocl/bin/clang-ocl' '--version' ``` and `foo.o` was left in the working directory. With this change, instead the executable is filtered out of the list on which we run `--version`, so `clang-ocl --version` is not run by Spack.
2024-11-11imports: move `conditional` to `directives.py`Todd Gamblin2-4/+4
`conditional()`, which defines conditional variant values, and the other ways to declare variant values should probably be in a layer above `spack.variant`. This does the simple thing and moves *just* `conditional()` to `spack.directives` to avoid a circular import. We can revisit the public variant interface later, when we split packages from core. Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl> Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-10lua: always generate pcfile without patch and remove +pcfile variant (#47353)Giuncan2-16/+26
* lua: add +pcfile support for @5.4: versions, without using a version-dependent patch * lua: always generate pcfile, remove +pcfile variant from all packages * lua: minor fixes * rpm: minor fix
2024-11-10mbedtls: add v2.28.9, v3.6.2 (fix CVEs) (#46637)Wouter Deconinck1-4/+12
* mbedtls: add v2.28.9, v3.6.1 (fix CVEs) * mbedtls: add v3.6.2
2024-11-10verilator: add v5.030 (#47455)Dave Keeshan1-1/+2
* Add 5.030 and remove the requirement to patch verilator, the problem has be fixed in this rev * Update var/spack/repos/builtin/packages/verilator/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-11-10GDAL: add v3.10.0 (#47472)Adam J. Stewart1-2/+8
2024-11-10benchmark: enable shared libraries by default (#47368)Stephen Nicholas Swatman1-0/+5
* benchmark: enable shared libraries by default The existing behaviour of Google Benchmark yiels static objects which are of little use for most projects. This PR changes the spec to use dynamic libraries instead. * Add shared variant
2024-11-10py-kornia: add v0.7.4 (#47435)Adam J. Stewart1-0/+1
2024-11-10librdkafka: added missing dependency on curl (#47500)Matthieu Dorier1-0/+3
* librdkafka: added missing dependency on curl This PR adds a missing dependency on curl in librdkafka. * librdkafka: added dependency on openssl and zlib
2024-11-10Add support for Codeplay AMD Plugin for Intel OneAPI Compilers (#46749)Kaan1-4/+34
* Added support for Codeplay AMD Plugin for Intel OneAPI Compilers * [@spackbot] updating style on behalf of kaanolgu * Adding 2025.0.0 * removed HOME and XDG_RUNTIME_DIR * [@spackbot] updating style on behalf of kaanolgu --------- Co-authored-by: Kaan Olgu <kaan.olgu@bristol.ac.uk>
2024-11-10Add v0.47 (#47456)Dave Keeshan1-0/+1
2024-11-10Disable the optional flexblas support as system flexiblas is possibly used ↵Chris Marsh1-0/+5
as flexiblas is not a depends and the entire build chain to support using flexibls is not setup. As this does not seem to be needed with the spack blas and lapack, it is easier to disable (#47514)
2024-11-10lksctp-tools: added version 1.0.21 (#47493)Matthieu Dorier1-0/+1
Adds version 1.0.21 of lksctp-tools
2024-11-10py-torchmetrics: add v1.5.2 (#47497)Adam J. Stewart1-0/+1
2024-11-09beatnik: add v1.1 (#47361)JStewart281-4/+9
Co-authored-by: Patrick Bridges <patrickb314@gmail.com>
2024-11-09cprnc: set install rpath and add v1.0.8 (#47505)Dom Heinzeller2-0/+21
2024-11-09Revert "upcxx %oneapi@2025: cxxflags add ↵eugeneswalker1-5/+1
-Wno-error=missing-template-arg-list-after-template-kw (#47503)" (#47512) This reverts commit 4322cf56b15a0a088156f5702d44a04e8238b4b3.
2024-11-09root: fix macos build (#47483)Seth R. Johnson1-1/+1
No ROOT `builtin` should ever be set to true if possible, because that builds an existing library that spack may not know about. Furthermore, using `builtin_glew` forces the package to be on, even when not building x/gl/aqua on macos. This causes build failures. Caused by https://github.com/spack/spack/pull/45632#issuecomment-2276311748 .
2024-11-09Revert "fix patched dependencies across repositories (#42463)" (#47519)Todd Gamblin6-58/+0
This reverts commit da1d533877f90610571b72f070c01e13b9729108.
2024-11-08fix patched dependencies across repositories (#42463)Greg Becker6-0/+58
Currently, if a package has a dependency from another repository and patches it, generation of the patch cache will fail. Concretization succeeds if a fixed patch cache is in place. - [x] don't assume that patched dependencies are in the same repo when indexing - [x] add some test fixtures to support multi-repo tests. --------- Signed-off-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-08upcxx %oneapi@2025: cxxflags add ↵eugeneswalker1-1/+5
-Wno-error=missing-template-arg-list-after-template-kw (#47503)
2024-11-08llnl.util.filesystem: multiple entrypoints and max_depth (#47495)Harmen Stoppels1-2/+2
If a package `foo` doesn't implement `libs`, the default was to search recursively for `libfoo` whenever asking for `spec[foo].libs` (this also happens automatically if a package includes `foo` as a link dependency). This can lead to some strange behavior: 1. A package that is normally used as a build dependency (e.g. `cmake` at one point) is referenced like `depends_on(cmake)` which leads to a fully-recursive search for `libcmake` (this can take "forever" when CMake is registered as an external with a prefix like `/usr`, particularly on NFS mounts). 2. A similar hang can occur if a package is registered as an external with an incorrect prefix - [x] Update the default library search to stop after a maximum depth (by default, search the root prefix and each directory in it, but no lower). - [x] The following is a list of known changes to `find` compared to `develop`: 1. Matching directories are no longer returned -- `find` consistently only finds non-dirs, even at `max_depth` 2. Symlinked directories are followed (needed to support max_depth) 3. `find(..., "dir/*.txt")` is allowed, for finding files inside certain dirs. These "complex" patterns are delegated to `glob`, like they are on `develop`. 4. `root` and `files` arguments both support generic sequences, and `root` allows both `str` and `path` types. This allows us to specify multiple entry points to `find`. --------- Co-authored-by: Peter Scheibel <scheibel1@llnl.gov>
2024-11-08pika: add 0.30.0 (#47498)Mikael Simberg1-0/+1
2024-11-07Revert "filesystem.py: add `max_depth` argument to `find` (#41945)"Harmen Stoppels1-2/+2
This reverts commit 38c8069ab42f44aa9f4779968937fc6842dc2109.
2024-11-07silo package: update patch (#47457)Chris White1-21/+9
Update patch based on LLNL/Silo#319 to fix build of 4.10.2
2024-11-07Add fast farm variant to openfast (#47486)Marc T. Henry de Frahan1-0/+2
2024-11-06loki%oneapi@2025: -Wno-error=missing-template-arg-list-after-template-kw ↵eugeneswalker1-0/+2
(#47475)
2024-11-06Add amr-wind versions (#47479)Marc T. Henry de Frahan1-0/+2
2024-11-06legion%oneapi@2025: cxxflags add ↵eugeneswalker1-0/+6
-Wno-error=missing-template-arg-list-after-template-kw (#47478)
2024-11-06slate %oneapi@2025: cxxflags: add ↵eugeneswalker1-0/+6
-Wno-error=missing-template-arg-list-after-template-kw (#47476)
2024-11-06nalu-wind: fix hypre constraints (#47474)Jon Rood1-3/+3
2024-11-06omega-h: new version and cuda conflicts for prior versions (#47473)Cameron Smith1-0/+8
* omegah: add version 10.8.6 * omegah: cuda without kokkos conflict * omegah: test with latest version in ci
2024-11-06gsoap: add v2.8.135 (#47415)Wouter Deconinck1-7/+24
* gsoap: add v2.8.135
2024-11-06tau: add v2.34 (#47471)eugeneswalker1-0/+1
2024-11-06rivet: add through v4.0.2 (incl yoda: add through v2.0.2) (#47383)Wouter Deconinck3-7/+32
* yoda: add v2.0.1, v2.0.2 * rivet: add v3.1.9, v3.1.10, v4.0.0, v4.0.1, v4.0.2 * rivet: yoda@:1 when @:3; conflicts hepmc3@3.3.0 when @:4.0.0 * rivet: fix style * rivet: hepmc=2 only when @:3; use libs.directories[0] * hepmc3: def libs * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-11-06edm4hep: Add json variant for newer versions (#47180)Thomas Madlener1-1/+11
* edm4hep: Add json variant for newer versions Explicit option has been added to EDM4hep so we now expose it via a variant as well. We keep the old behavior where we unconditionally depended on nlohmann-json and implicitly built JSON support if we could detect it cmake stage * Fix condition statement in when clause * Use open version range to avoid fixing to single version --------- Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2024-11-06Feature: Allow variants to propagate if not available in source pkg (#42931)Richarda Butler8-0/+81
Variants can now be propagated from a dependent package to (transitive) dependencies, even if the source or transitive dependencies have the propagated variants. For example, here `zlib` doesn't have a `guile` variant, but `gmake` does: ``` $ spack spec zlib++guile - zlib@1.3%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel8-broadwell - ^gcc-runtime@12.2.0%gcc@12.2.0 build_system=generic arch=linux-rhel8-broadwell - ^gmake@4.4.1%gcc@12.2.0+guile build_system=generic arch=linux-rhel8-broadwell ``` Adding this property has some strange ramifications for `satisfies()`. In particular: * The abstract specs `pkg++variant` and `pkg+variant` do not intersect, because `+variant` implies that `pkg` *has* the variant, but `++variant` does not. * This means that `spec.satisfies("++foo")` is `True` if: * for concrete specs: `spec` and its dependencies all have `foo` set if it exists * for abstract specs: no dependency of `spec` has `~foo` (i.e. no dependency contradicts `++foo`). * This also means that `Spec("++foo").satisfies("+foo")` is `False` -- we only know after concretization. The `satisfies()` semantics may be surprising, but this is the cost of introducing non-subset semantics (which are more useful than proper subsets here). - [x] Change checks for variants - [x] Resolve conflicts - [x] Add tests - [x] Add documentation --------- Co-authored-by: Gregory Becker <becker33@llnl.gov> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-11-05masa: add versions and update dependencies (#47447)Jon Rood1-8/+15
* masa: add versions * masa: update dependencies
2024-11-05Fix filter_compiler_wrappers with mpi (#47448)wspear1-2/+8
2024-11-05omega-h: fix versioning and cuda compat (#47433)Harmen Stoppels3-29/+18
2024-11-05cgal: add v6.0.1 (#47285)Martin Lang2-2/+4
2024-11-05paraview: add forward compat bound with cuda (#47430)Harmen Stoppels1-0/+3
2024-11-05Add Adiak v0.4.1 (#47429)David Boehme1-1/+2
2024-11-05extrae: fix build with gcc@14 (#47407)Mosè Giordano1-0/+12