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2023-05-04intel-oneapi-mkl: include mpi libs when using +cluster (#37386)Robert Cohn1-1/+4
2023-05-04iperf2: Add new versions 2.1.{7,8,9} (#37408)Jack Morrison1-0/+3
2023-05-04py-amici, py-python-libsbml: new packages (#35532)Erik Heeren2-0/+68
* py-amici, py-python-libsbml: new packages * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Swig and cmake are build-only dependencies * cmake as a run dependency after all * py-amici: default boost and hdf5 variants to True --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-04perl: fix jobserver job issue (#37428)Harmen Stoppels1-0/+6
When building perl with posix jobserver, it seems to eat jobs, which reduces parallelism to 1 in many cases, and is rather annoying. This is solved in GNU Make 4.4 (fifo is more stable than file descriptors), but that version is typically not available. So, fix this issue by simply unsetting MAKEFLAGS for the duration of ./Configure. That's enough, and the build phase runs perfectly in parallel again.
2023-05-04cmake build system: change default build type to `Release` (#36679)Massimiliano Culpo25-174/+0
This switches the default Make build type to `build_type=Release`. This offers: - higher optimization level, including loop vectorization on older GCC - adds NDEBUG define, which disables assertions, which could cause speedups if assertions are in loops etc - no `-g` means smaller install size Downsides are: - worse backtraces (though this does NOT strip symbols) - perf reports may be useless - no function arguments / local variables in debugger (could be of course) - no file path / line numbers in debugger The downsides can be mitigated by overriding to `build_type=RelWithDebInfo` in `packages.yaml`, if needed. The upside is that builds will be MUCH smaller (and faster) with this change. --------- Co-authored-by: Gregory Becker <becker33@llnl.gov>
2023-05-04Add pika 0.15.0 (#37403)Mikael Simberg1-0/+1
2023-05-04Add patches for generic context coroutine stack allocation in pika on macos ↵Mikael Simberg6-0/+73
(#37288)
2023-05-04cabana: Add optional silo build (#37393)Sam Reeve1-1/+3
2023-05-03py-lightly: add v1.4.4 (#37406)Adam J. Stewart1-0/+1
2023-05-03libjwt: add v1.15.2 (#37333)Alec Scott1-0/+1
2023-05-03mii: add v1.1.2 (#37335)Alec Scott1-0/+1
2023-05-03texinfo: add v7.0.3 (#37348)Alec Scott1-0/+1
2023-05-03py-mne: add 1.3.1 (#37399)Manuela Kuhn1-2/+1
2023-05-03py-neurora: add 1.1.6.9 (#37398)Manuela Kuhn1-0/+1
2023-05-03py-neurokit2: add 0.2.4 (#37396)Manuela Kuhn1-0/+1
2023-05-03py-bidskit: add 2023.2.16 (#37395)Manuela Kuhn1-0/+1
2023-05-03py-nilearn: add 0.10.1 (#37394)Manuela Kuhn1-4/+6
2023-05-03perl-module-install: add v1.21 (#37341)Alec Scott1-0/+1
2023-05-03Intel MPI Benchmarks 'IMB-P2P' is available for versions newer than 2018. ↵Jack Morrison1-1/+1
(#37360)
2023-05-03intel-tbb: Add versions 2021.8.0 and 2021.9.0 (#37391)Tim Haines1-0/+2
2023-05-02libintl, iconv, gettext: account for libc provider and externals (#35450)Chris Green39-127/+243
* libiconv can be provided by libc, so update packages which depend on libiconv to require the iconv virtual instead * Many packages need special consideration when locating iconv depending on whether it is provided by libc (no prefix provided) or the libiconv package (in that case we want to provide a prefix) * It was also noticed that when an iconv external was provided, that there was interference with linking (this should generally be handled by Spack's compiler wrappers and bears further investigation) * Like iconv, libintl can be provided by libc or another package, namely gettext. It is not converted to a provider like libiconv because it provides additional routines. The logic is similar to that of iconv but instead of checking the provider, we check whether the gettext installation includes libintl.
2023-05-02Guard use of OpenMP in rocblas test (#36673)renjithravindrankannath2-1/+415
* Provide openmp from rocm-open-extras for roblas test * Addressing the prechecks/audit/package-audits check * Correcting style check errors. * rocm-openmp-extras path veriable restricting for test * Correcting the env variable to run_tests * Guard use of OpenMP to make it optional in rocblas test * Removing unused patch
2023-05-02trilinos: add version 14.0.0 (#37387)Zack Galbreath1-0/+1
2023-05-02GitHub Actions: do not install six in CI (#37361)Massimiliano Culpo5-20/+10
* GitHub Actions: do not install six in CI * Remove workflow code that was commented out * Remove any use of "six" from packages
2023-05-02hip: Patch to handle file reorg changes for the tests (#36993)renjithravindrankannath2-0/+142
* Patch to handle file reorg changes for the tests * Correcting patch file name * Limiting hipify-clang path to 5.4 and later * Set hipify-clang path env in CMake
2023-05-02gromacs: add 2023.1 version (#37371)Daniel Ahlin1-0/+1
2023-05-02muparser: add v2.3.4 (#37298)Alec Scott1-0/+1
2023-05-02globalarrays: add v5.8.2 (#37325)Alec Scott1-0/+1
2023-05-02spot: add v2.11.5 (#37299)Alec Scott1-0/+1
2023-05-02osi: add v0.108.8 (#37340)Alec Scott1-0/+1
2023-05-02ports-of-call: add version 1.5.1 (#37366)Richard Berger1-0/+1
2023-05-02proj: don't depend on googletest at build time (#37240)Glenn Johnson1-1/+1
* proj: v6 depends on googletest at build time * Have cmake block check for run_tests
2023-05-02uriparser: add v0.9.7 (#37350)Alec Scott1-0/+1
2023-05-02redis-plus-plus: add v1.3.8 (#37344)Alec Scott1-0/+1
2023-05-02lua: add v5.4.5 (#37334)Alec Scott1-0/+1
2023-05-02sqlitebrowser: add v3.12.2 (#37300)Alec Scott1-0/+1
2023-05-02intel-tbb: backport GCC 13 support patch (#37291)Jonathon Anderson2-0/+31
2023-05-02steps: add version 4.1.1, remove others (#37250)Tristan Carel1-30/+97
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-05-02dealii: add support for 9.4.1 and 9.4.2 (#36627)Luca Heltai1-3/+19
* Make sure the standard is cxx17 for 9.4: * Fix patches for > 9.4
2023-05-02libpfm4: add version 4.13.0 (#37364)Mark W. Krentel1-0/+1
2023-05-02gdb: add missing zstd, add system dep for zlib (#37369)Harmen Stoppels1-4/+10
2023-05-02visit: python 3.9 and above acceptable (#37071)Olivier Cessenat1-1/+1
2023-05-02gh: add v2.28.0 (#37302)Alec Scott1-0/+1
2023-05-02amrex: add 23.05 (#37362)Weiqun Zhang1-1/+2
2023-05-02tree: add v2.1.0 (#37349)Alec Scott1-0/+1
2023-05-02gnupg: add v2.4.1 (#37326)Alec Scott1-0/+1
2023-05-01libibumad: add v44.1 (#37332)Alec Scott1-0/+1
2023-05-01pharokka: add v1.3.2 (#37342)Alec Scott1-0/+1
2023-05-02jsoncpp: add v1.9.5 (#37303)Alec Scott1-0/+1
2023-05-02nco: add v5.1.5 (#37338)Alec Scott1-0/+1