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2021-03-26update ascent and friends for the ascent 0.7.0 release (#22428)Cyrus Harrison7-60/+95
2021-03-26clingo: modify recipe for bootstrapping (#22354)Massimiliano Culpo2-4/+26
* clingo: modify recipe for bootstrapping Modifications: - clingo builds with shared Python only if ^python+shared - avoid building the clingo app for bootstrapping - don't link to libpython when bootstrapping * Remove option that breaks on linux * Give more hints for the current Python * Disable CLINGO_BUILD_PY_SHARED for bootstrapping * bootstrapping: try to detect the current python from std library This is much faster than calling external executables * Fix compatibility with Python 2.6 * Give hints on which compiler and OS to use when bootstrapping This change hints which compiler to use for bootstrapping clingo (either GCC or Apple Clang on MacOS). On Cray platforms it also hints to build for the frontend system, where software is meant to be installed. * Use spec_for_current_python to constrain module requirement
2021-03-26ASP-based solver: model disjoint sets for multivalued variants (#22534)Massimiliano Culpo1-0/+15
* ASP-based solver: avoid adding values to variants when they're set fixes #22533 fixes #21911 Added a rule that prevents any value to slip in a variant when the variant is set explicitly. This is relevant for multi-valued variants, in particular for those that have disjoint sets of values. * Ensure disjoint sets have a clear semantics for external packages
2021-03-26julia: new version (#22537)Robert Mijakovic1-0/+2
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-26bump up version for rocm-4.1. release (#22531)Sreenivasa Murthy Kolam14-24/+47
2021-03-26Revert "gdbm: new version (#22505)" (#22568)Massimiliano Culpo1-6/+5
This reverts commit d56c6299326ee53de6b64a409bb1ca631aeeb7e6.
2021-03-26hdf-eos2: fix build when hdf is built without szip (#21788)Tomoyasu Nojiri1-3/+0
2021-03-26mumps: add v5.3.5. (#22564)Rémi Lacroix1-2/+4
2021-03-26SquashFUSE: add new package, add libfuse detection (#22511)Harmen Stoppels2-0/+58
2021-03-26gdbm: new version (#22505)Robert Mijakovic1-5/+6
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-26openmpi: add another maintainer (#22563)Howard Pritchard1-1/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-03-25New R package memuse (#22494)Desmond Orton1-0/+24
2021-03-25zstr: new package, update lbann dependency (#22309)Brian Van Essen2-0/+32
2021-03-25Libwhich: which for libraries. (#22461)dmageeLANL1-0/+27
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-03-25openssl: new version 1.1.1k (#22545)Andrew W Elble1-11/+12
also deprecates <1.1.1k since they are affected by high severity issues
2021-03-25mercurial: new version (#22539)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-25libblastrampoline: Add version 3.0.3 (#22529)Mosè Giordano1-0/+1
2021-03-24New R package pinfsc50 (#22493)Desmond Orton1-0/+25
2021-03-25py-dask-glm: Added document build (#22293)a-saitoh-fj1-1/+24
* py-dask-glm: Push again for testing with git. * py-dask-glm: Fixed the pointed out OSS dependency setting to type=build. * py-dask-glm: Set depends_on to type=build in the OSS to be built when building the document. * py-dask-glm: Fix type of depends_on (py-scikit-learn) Co-authored-by: miura <miura@fx7-pg01.cm.cluster>
2021-03-24Llvm 7 intel patch (#22516)Ethan Stam2-0/+53
* llvm@7 add patch for intel * Fix invalid version specifier
2021-03-24mesa: add gcc 10.1.0 conflict (#22514)kurtsansom1-0/+4
2021-03-24fix issue #18853 build of gdk-pixbuf (#22517)Gregory Lee1-4/+9
* fix issue #22228 build of gdk-pixbuf * Update var/spack/repos/builtin/packages/gdk-pixbuf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-24intel-parallel-studio: new version (#22510)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24openmpi: do not over specify hwloc version dep (#22498)Howard Pritchard1-1/+1
related to #22497 Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-03-24go: add v1.16.2 (#22506)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gromacs: add v2021.1 (#22507)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24hadoop: add v3.3.0, v3.2.2 (#22508)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gdb: resolve issue with libintl_gettext (#22478)Robert Mijakovic2-0/+16
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23adding debugedit package. (#22458)Vanessasaurus1-0/+32
This package used to be a part of rpm, but now is being developed separately. It will supposedly be moved to a sourceware branch (it is maintained by redhat) but I do not know if this will happen soon. We need it in order to change locations in binaries that are built in /tmp and then moved elsewhere. I will ping @woodard who might be able to give us an estimate if we should include this development repository or wait for it to be moved elsewhere. Once this is merged, we will want to use the bootstrap approach to install and use the library from spack. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-03-23new package py-pyem (#22425)Desmond Orton1-0/+27
* new package py-pyem * Added patch note and removed homepage * Style fixes * Moved the version above deps * Style fix on line 20
2021-03-23Grace: new package (#22476)Rémi Lacroix1-0/+54
2021-03-23Allow DataTransferKit to be built with external ArborX package (#22486)Daniel Arndt2-1/+7
2021-03-23Add older versions fo py-msgpack-numpy (#22490)Robert Rosca1-0/+6
2021-03-23OpenFOAM-org: Fix compilation of version 2.4.0. (#22472)Rémi Lacroix2-0/+32
Fix "isnan" errors when compiling version 2.4.0 with recent compilers.
2021-03-23OpenFOAM: Depend on CGAL 4.X. (#22474)Rémi Lacroix1-1/+2
CGAL 5.X is currently not supported.
2021-03-23Initial version of libsakura (#22488)Martin Pokorny2-0/+69
2021-03-23VAPOR: new package (#22477)Rémi Lacroix1-0/+50
2021-03-23cryptsetup: new version (#22470)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23intel: new version, 20.0.4 (#22484)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23Channelflow: Fix the package. (#22483)Rémi Lacroix1-1/+1
A search and replace went wrong in 2264e30d99d8b9fbdec8fa69b594e53d8ced15a1. Thanks to @wadudmiah who reported this issue.
2021-03-23git: new version (#22479)Robert Mijakovic1-0/+15
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23flexiblas: add 3.0.4 (#22485)Michael Kuhn1-0/+1
2021-03-23cuda: add v11.2.2 (#22471)Robert Mijakovic1-0/+4
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23OpenMPI: require ssh run dependency (#22115)Harmen Stoppels5-26/+32
* Bump gdbm * Add libedit 3.1 * Bump OpenSSH to 8.5p1 * Bump lz4 * Add openssh as a runtime dep of openmpi
2021-03-23gmake: add v4.3 (#22480)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23cmake: new version (#22469)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23orthofinder: retrieve sources, overhaul recipes (#22423)Desmond Orton1-8/+26
2021-03-23fujitsu-ssl2: fix to library list and env variables (#22462)takanori-ihara1-5/+10
2021-03-22Oneapi packages: update URLs, environment management, and dependencies (#22202)Robert Cohn10-217/+156
* Replace URL computation in base IntelOneApiPackage class with defining URLs in component packages (this is expected to be simpler for now) * Add component_dir property that all oneAPI component packages must define. This property names a directory that should exist after installation completes (useful for making sure the install was successful) and also defines the search location for the component's environment update script. * Add needed dependencies for components (e.g. intel-oneapi-dnn requires intel-oneapi-tbb). The compilers provided by intel-oneapi-compilers need some components under certain circumstances (e.g. when enabling SYCL support) but these were omitted since the libraries should only be linked when a dependent package requests that feature * Remove individual setup_run_environment implementations and use IntelOneApiPackage superclass method which sources vars.sh (located in a subdirectory of component_dir) * Add documentation for IntelOneApiPackge build system Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
2021-03-22clingo-bootstrap: account for cray platform (#22460)Massimiliano Culpo1-3/+7
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