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* new builtin package: biobb-common
* removed whitespace for the style test
* replaced ' by " for the style test
* changed import line for the style test
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed test
* using pypi instead of git
I hope this is declared the right way.
I tried to test it locally but I am having problems with a dependency (openblas) thus I can not even try if this works.
* upgraded version
* Added py prefix
* removed biopython version restriction
* directory with new py-prefixed name
* Delete old non-prefixed package
* Update var/spack/repos/builtin/packages/py-biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* netcdf-fortran: enable building against static netcdf-c
* netcdf-fortran: strip the output of nc-config
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Co-authored-by: Servesh Muralidharan <smuralidharan@anl.gov>
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Co-authored-by: Servesh Muralidharan <smuralidharan@anl.gov>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* update tarball urls, add new versions and update maintainers
* remove unnecessary variant like cross-compile
* use self.define and self.define_from_variant
* improve regex / bug that matches with -DMPICH_SKIP_MPICXX=1
Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Based on CMakeLists.txt, the subfiling VFD requires a parallel HDF5 build.
So make +subfiling variant depend on +mpi
Should resolve #42323
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Add support for -icpx for oneapi
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* update axom package from axom's repo
Co-authored-by: white238 <white238@users.noreply.github.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
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Co-authored-by: inada-yoshie <inada.yoshie@fujitsu.com>
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* Added countdown repo
* Added fixed version of COUNTDOWN
* Style fixes
* Changed mantainer syntax
* Variants listed in alphabetical order by name
* Added conflicts and some reordering
* Fixed conflicts syntax
* Style fixes
* [@spackbot] updating style on behalf of danielecesarini
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Co-authored-by: danielecesarini <danielecesarini@users.noreply.github.com>
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* pflogger: add version 1.12
* Add version
* return MPI variant to false default
* [@spackbot] updating style on behalf of mathomp4
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Co-authored-by: mathomp4 <mathomp4@users.noreply.github.com>
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Needed for latest version of sfcgal
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Fixes CI on develop
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* Trilinos: Add AMD to SuiteSparse TPL list
When Trilinos is built with SuiteSparse support, it should enable AMD as
one of the TPLs. It was previously enabling only UMFPACK. The Xyce
package uses AMD (but not UMFPACK).
* Xyce: Add 7.8 release and various improvements
In addition to adding the latest Xyce release (7.8), all the earlier
releases were deprecated, with the exception of 7.7.
The Trilinos specification was updated to remove unneeded packages,
explicitly enable all needed packages, and specify additional
do-not-build packages.
The serial build is now the default, with MPI still being an option.
I also epanded the explanation for one of the patches; and, finally, I
took the opportunity to update the Xyce description to better match the
current Xyce README description.
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* slurm: add new versions
* mpich: apply hostlist_t patch for newer Slurm versions
* [@spackbot] updating style on behalf of rbberger
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Co-authored-by: rbberger <rbberger@users.noreply.github.com>
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HPCToolkit `develop` now can optionally be built via Meson. This PR adds the `build_system=(autotools|meson)` variant and splits the build-system-dependent pieces into `AutotoolsBuilder` and `MesonBuilder`. The default is to build with `autotools`.
As of writing, the Meson is simply a wrapper around the original Autotools build, hence the build requires a native file listing install prefixes of all dependencies (which are internally mapped to `--with-{pkg}={prefix}` arguments for `./configure`). This is an unconventional but temporary state of affairs until the build system is fully ported to Meson and conventional dependency acquisition techniques like `pkg-config` and `cmake` are practically available.
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The CUDA target should be specified at build time, otherwise
by default `autodock-gpu` will be built for compute capabilities
52, 60, 61, 70, which may cause errors on unsopported cards.
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