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2020-08-16[dd4hep] align runtime env with lcg release (#18082)vvolkl1-0/+2
2020-08-16Adding osu-micro-benchmarks version 5.6.3 (#18090)Filippo Spiga1-1/+2
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2020-08-16xz: add +pic variant (#18092)Mark W. Krentel1-0/+8
xz-utils already builds a shared library. The +pic variant adds the compiler pic flag to the static archive so that it can be linked into another shared library.
2020-08-16Add boost 1.74.0 package (#18088)Auriane R1-0/+1
2020-08-16New packages: madgraph, syscalc, collier, gosam-contrib (#17601)iarspider6-0/+1238
* Add Collier and SysCalc recipes * Remove extra syscalc version * Build collier with -j1 for @:1.2.4 * Add recipe for gosam-contrib * Update gosam-contrib recipe with 'provides' * Madgraph recipe, first version * Finalize madgraph recipe + flake8 * Make py2 version of madgraph default; fix hash for syscalc; fix patch * Handle virtual packages (#3) * Update package.py * Update packages.yaml * Remove virtual packages - pt. 1 * Remove virtual packages - pt. 2 * Changes from review - pt. 1 * Changes from code review - pt. 2 * Update var/spack/repos/builtin/packages/collier/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/madgraph5amc/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add hash for version 2.7.2 (available in our private mirror) * Fixes for 2.7.3 family * Patches for 2.7.3{.py3,}{.atlas,} * Fix hash of syscalc * Hack to fix concretization (2.7.3 matches 2.7.3.py3) * Add conflict statement (reported to devs) * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Delete madgraph5amc-2.7.2.atlas.patch * Delete madgraph5amc-2.7.2.patch * Update package.py * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: iarspider <iarpsider@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-16New packages Mvapich2x and Mvapich2-GDR (#17883)Nithin Senthil Kumar2-0/+424
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors * Added docstring descriptions to both packages * Removed variant wrapper for cuda dependencies * Fixed multiple flake8 errors * Updated APIs to pass unit tests * Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR * Changed url back to single line * Removed extra parantesis around URL string Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-15[root] add dataframe cmake option (#17962)vvolkl1-1/+2
* [root] add dataframe cmake option @chissg @HadrienG2 @drbenmorgan This has been a separate cmake option starting v6-19 I believe: https://github.com/root-project/root/commit/31292b90826fbb1aaf0694c445f5996cdde3f358 It should default to true -- not sure why, but this recipe sets it to off. I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here. * Update package.py
2020-08-14pugixml: add version 1.10, add option for shared libs (#18072)Chuck Atkins1-1/+13
2020-08-14Python: add spack external find support (#16684)Adam J. Stewart1-0/+76
2020-08-14pkgconfig: add spack external find support (#16690)Adam J. Stewart2-0/+28
2020-08-14Autoconf: add spack external find support (#16692)Adam J. Stewart1-1/+12
2020-08-14M4: add spack external find support (#16693)Adam J. Stewart1-1/+13
2020-08-14bmake: fix compilation error and added v20200710 (#17956)darmac1-0/+4
2020-08-14GDAL: add spack external find support (#18004)Adam J. Stewart1-0/+6
2020-08-14gmake: add spack external find support (#18009)Adam J. Stewart1-1/+9
2020-08-14nextflow: added v20.07.1 (#18058)Levi Baber1-0/+1
2020-08-14Bazel: add spack external find support (#18008)Adam J. Stewart1-0/+10
2020-08-14OpenGL: add spack external find support (#18003)Adam J. Stewart1-2/+9
2020-08-14GMT: add spack external find support (#18007)Adam J. Stewart1-0/+6
2020-08-14Adding external package support for tar. (#18002)Robert Blake1-0/+8
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14External package recognition for git. (#18010)Robert Blake1-0/+20
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14external packages: redirect stderr too (#18037)Adam J. Stewart5-7/+6
2020-08-14NETCDF-C: added v4.7.4 (#18051)Greg Sjaardema1-0/+1
2020-08-14SEACAS: added v2020-05-12 and v2020-08-13 (#18053)Greg Sjaardema1-0/+2
2020-08-14ceed: fix @3.0.0 dependency on hypre@2.18.2 (#17983)Jed Brown1-0/+3
Co-authored-by: Veselin Dobrev <dobrev1@llnl.gov>
2020-08-14Matplotlib: added v3.3.1 (#18061)Adam J. Stewart1-4/+9
2020-08-14py-certifi: add v2020.6.20 (#18060)Adam J. Stewart1-1/+2
2020-08-14Bash: add v5.0.18, external package detection (#18062)Adam J. Stewart1-2/+12
2020-08-13fix configure.ac/autotools issue that casues problems on RHEL 7.7 (#17465)Kai Germaschewski1-0/+4
2020-08-13Update the change to add gomp compatibity to llvm-openmp. (#17400)Jim Galarowicz1-1/+11
* Update the change to add gomp compatibity to llvm-openmp. * Update the change to add gomp compatibity to llvm-openmp using append instead of extend. * Fix flake8 issue. Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
2020-08-13Add support for pFUnit version 4 (#17683)Alicia Klinvex1-8/+27
* pFUnit: Added support for version 4 pFUnit v4 uses submodules, so we must fetch from the repo rather than grabbing the tarball (see #11642). * pFUnit: Added conflicts pFUnit 4 causes an internal compiler error with gcc 7.2.0, and several pFUnit versions are incompatible with shared libraries. * pFUnit: Added conflicts for version 4 Verson 4 uses Fortran 2008 features and cannot be built with gcc compilers prior to 8.4. * pFUnit: Fixed conflicts/dependencies as suggested * pFUnit: Version 4 no longer fetches from git Checksummable files are fetched instead. * pFUnit: Simplify major version check Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * pFUnit: Removed unnecessary patch for v4 The patch is still applied to v3. * pFUnit: Modified MPI flag for v4 pFUnit v3 and v4 use different CMake flags to enable/disable MPI support. Also added a conflict for v3 with MPI enabled using gfortran 10, since newer gfortran is more finicky about datatypes. * pFUnit: Rearranged mpi logic * pFUnit: changed m4 to a build dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * pFUnit: Added URL back I did not realize it was needed by "spack versions" and "spack checksum". Thanks @adamjstewart! Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-13AMD ROCm Mathlibs (#17699)Ganesh Kumar7-0/+234
* ROCm Mathlibs * fixed the review comments * fixed flake8 issues
2020-08-13gcc: improve detection functions (#17988)Massimiliano Culpo1-10/+40
* Don't detect Apple's clang as gcc@4.2.1 * Avoid inspecting links except for Cray platforms * Always return string paths from compiler properties * Improved name-based filtering (apt-based packages)
2020-08-13IOR package: added 3.3.0rc1 and develop version (#18036)Nikolay Simakov1-1/+3
* IOR package: added 3.3.0rc1 and develop version * IOR package: reordered versions, set 3.2.1 as preferred
2020-08-13Make mpich buildable without fortran (#17964)Harmen Stoppels1-12/+29
When the user explicitly sets ~fortran, mpich builds without fortran support. This will make building C/C++ libraries using clang easier, since clang does not offer a fortran compiler by default (yet). Since the user has to disable Fortran support explicitly, this change is not breaking.
2020-08-13update vtk-h release (#18052)Matt Larsen1-0/+1
2020-08-13llvm: added external detection capabilities (#17989)Massimiliano Culpo1-2/+107
* llvm: added external detection capabilities * Added comment with reference to external package detection docs * Fix typo in a comment
2020-08-13gotcha: fixed building v0.0.2 on ARM (#18012)h-denpo2-20/+4
2020-08-12eztrace: add space, --linkfortran, -Wl (#17801)ketsubouchi1-0/+20
2020-08-12Axom + Conduit updates (#17863)Chris White2-10/+27
* Loosen Axom's variants, add shared variant for axom, fix clang/xlf rpath'ing problem on blueos * Fix flake8 * Add main branch to list of known git branches
2020-08-12mpich, mvapich2: fixed setup_*_environment (#18032)Massimiliano Culpo2-4/+8
fixes #18028 Since now external packages support multiple modules the correct thing to do is to check if the name of the *first* module to be loaded contains the string "cray"
2020-08-12Make the build stage of OpenSSL parallel (#18024)Harmen Stoppels1-4/+4
2020-08-12libpciaccess: New version 0.16 (#18035)Erik Schnetter1-0/+1
2020-08-12cmake: Add version 3.16.3 (#18034)Erik Schnetter1-0/+1
`cmake @3.16.3` is the version provided by Ubuntu 20.04. Adding this version here avoids the warning ``` ==> Warning: Missing a source id for cmake@3.16.3 ``` when using the system `cmake`.
2020-08-12Spack recipes for ROCm software components-Phase1 (#17422)srekolam26-0/+1027
* Spack recipes for ROCm Stage 1 Build components * fix flake8 errors * fixes for flake8 errors * Add a patch for cmake 3.x suport * Fix rpath issue where hsa-rocr-dev does not allow it to be filled in by spack * Remove inherited cmake args from comgr * Make hsakmt-roct compile: no -Werror because with const cast in numa, and actually add the numa dependency * Remove redundant cmake args which is inherited * Fix some dependencies * Fix some python 2.x compatibilities * Add amd gpu targets to rocfft * Make comgr a link dep of rocm-dbgapi and remove redundant cmake args * Remove redundant cmake args * Remove more redundant cmake args * Final redundant args * Use cmake 3.x instead of a fixed version * Remove random variable * Use installed rocclr instead of nonexisting directory * Don't build outside the staging folder * Deploy some missing cmake target file * Formatting * Fix target list * Properly handle the rocclr dependency * Formatting * Fix vermin test * Make all 3.5.0 package depend exactly on eachother * Add a few missing link dependencies * Fix flake8 * Remove some other redundant flags * Add gcc install prefix for gcc builds of llvm-amdgpu * review changes for the spack recipes * Do not hard-code versions * Fix atmi install - no more relative rpaths outside of install directory (required patch) - fix build -> link dependencies - remove unused build dependency * Fix flake8 errors * Remove unused variable and make things python 2.x compatible * Fix flake8 * Move compiler config from rocfft -> hipcc * Remove redundant dependency on fftw-api * Remove redundant import * Avoid hitting the ROCM_PATH variable altogether with a patch; also just fill in all variables * Add missing deps z3, zlib and ncurses+termlib to llvm-amdgpu * Fix perl shebang and add dep * Fix typo and patch HIP_CLANG_ROOT detection in hip's cmake files * fixing build failure due z3 and adding zlib for rocgdb * new changes to add z3,curses dependency for llvm-amdgpu * fix flake8 error Co-authored-by: root <root@localhost.localdomain> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-12petsc: add explicit build dependency: diffutils (#17979)eugeneswalker1-0/+2
2020-08-12Update FleCSPH package (#17997)Julien Loiseau1-9/+18
* Update FleCSPH package * Flake8 corrections * Update FleCSI version
2020-08-12Adding externals support for CUDA. (#18011)Robert Blake1-0/+10
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12Use configure-release instead of configure for UCX (#17941)Jon Rood1-2/+4
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12librsb: added v1.2.0.9 (#18015)Michele Martone1-1/+2
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