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2020-11-14argon2: new package at v20190702 (#19917)darmac1-0/+23
2020-11-14newt: new package at v0.52.21 (#19915)darmac1-0/+20
2020-11-14mathematica : added v12.1.1 (#19842)Antonio Arena1-2/+7
2020-11-14nwchem: remove patches for v6.6 (no longer supported) (#19906)Edoardo Aprà1-31/+0
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
2020-11-14ipcalc: new package at v0.2.3 (#19912)darmac1-0/+29
2020-11-13[gcc] depends_on diffutils (for all versions) (#19907)Wouter Deconinck1-0/+1
2020-11-13Updated STAR to version 2.7.6a (#19904)Alexander Baumgarten1-1/+2
2020-11-13Feature/r tximportdata (#19902)Alexander Baumgarten1-0/+16
* # FIXME: Add a list of GitHub accounts to # FIXME: Add a list of GitHub accounts to Package for r-tximportData * Fixed file format / flake8 errors
2020-11-13binutils: Fix checksum for 2.35.1 (#19901)fodinabor1-1/+1
As noted in #19899 and introduced by #19827
2020-11-13Add sio and add it as possible dependency for podio (#19875)Thomas Madlener2-1/+65
Newest podio can use SIO as backend
2020-11-13AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, ↵arjun-raj-kuppala4-9/+21
hip-rocclr and atmi (#19832) * AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib * AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi * Update package.py * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/hip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-13suite-sparse: mpfr, gmp needed for @5.8.0: (#19898)eugeneswalker1-2/+2
2020-11-13bump up version for 3.9.0 (#19894)Sreenivasa Murthy Kolam1-1/+2
2020-11-13openfoam: Fix for aarch64 (#19803)t-nojiri1-1/+2
* openfoam: Fix for aarch64 * openfoam: Add comment for openfoam-org
2020-11-12ROCm 3.9 Stage2 recipe (#19838)Ganesh Kumar10-12/+22
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-12Add feq-parse package (#19891)Joseph Schoonover1-0/+21
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2020-11-12binutils: add version 2.35.1 (#19827)Tim Haines1-0/+1
2020-11-12openmpi: external detection support (#18600)Robert Blake1-0/+140
2020-11-12py-cython: python is a link dep (#19768)Adam J. Stewart1-2/+2
2020-11-12py-matplotlib: set LIBRARY_PATH to locate link deps (#19855)Adam J. Stewart1-1/+17
* py-matplotlib: set LIBRARY_PATH to locate link deps * py-matplotlib: add v3.3.3
2020-11-12OpenSSL: libs may be in lib64 directory (#19862)Adam J. Stewart1-1/+2
2020-11-12[gaudi] v35r0 (#19878)vvolkl2-27/+23
* [gaudi] v35r0 * [gaudi] format * [gaudi] comments from #19878
2020-11-12Add smoke tests to Ginkgo. (#19888)tcojean1-0/+7
2020-11-12suite-sparse: add deps: mpfr, gmp (#19883)eugeneswalker1-0/+2
2020-11-12py-vermin: add latest version 1.0.3 (#19886)Morten Kristensen1-1/+2
2020-11-12[acts] conflicts with %gcc@:7 since @0.23: due to c++17 <charconv> (#19881)Wouter Deconinck1-0/+1
2020-11-12new release: cdo-1.9.9 (#19876)Brian Spilner1-0/+1
2020-11-12elpa: Fix for aarch64 (#19872)t-nojiri1-0/+3
2020-11-12xsdk@0.6.0 (#19846)Satish Balay5-14/+103
Update: hypre@2.20.0 mfem@4.2.0 superlu-dist@6.4.0 trilinos@13.0.1 datatransferkit@3.1-rc2 petsc@3.14.1 dealii@9.2.0 pflotran@xsdk-0.6.0 alquimia@xsdk-0.6.0 sundials@5.5.0 plasma@20.9.20 magma@2.5.4 amrex@20.10 slepc@3.14.0 omega-h@9.32.5 strumpack@5.0.0 pumi@2.2.5 tasmanian@7.3 phist@1.9.3 ginkgo@1.3.0 py-libensemble@0.7.1 precice@2.1.1 butterflypack@1.2.1 New: heffte@2.0.0 slate@2020.10.00 Variants: datatransferkit heffte slate petsc: enable +cuda sundials: enable +cuda +trilinos strumpack: enable +cuda
2020-11-12Package/r bigalgebra (#19826)Desmond3-0/+61
* py-json-get: new package at 1.1.1 * py-json-get: new package at 1.1.1 * r-bigalgebra: new package at 0.8.4 * r-bigalgebra: new package at 0.8.4 with corrections * Added an additional change to tarball and dependencies * removing accidentally added file * Added tarball that uses mirror and removed redundant dependencies * Fixed version and added dep. * Updated checksum * Fixed urls * Added list_url Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-12SuperLU-Dist: Add CUDA variant (#19847)Pieter Ghysels1-2/+13
* Add CUDA support to superlu-dist * Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib so it works for both lib and lib64 The suggested: args.append('-DTPL_CUDA_LIBRARIES=' + spec['cuda'].libs.ld_flags) did not work because it does not link with cuBLAS.
2020-11-12Fix scalapack build error (#19824)Jean-Paul Pelteret1-3/+14
2020-11-12kokkos add "graviton" to spack_micro_arch_map (#19869)Satish Balay1-0/+2
* kokkos add "graviton" to spack_micro_arch_map * also add "graviton2"
2020-11-11yaml-cpp: Improve shared library building (#19866)Dr. Christian Tacke1-12/+5
* No version of yaml-cpp in spack can build shared AND static libraries at the same time. So drop the "static" variant and let "shared" handle that alone. Or in other words: No version handles the BUILD_STATIC_LIBS flag. * The flag for building shared libraries changed from BUILD_SHARED_LIBS to YAML_BUILD_SHARED_LIBS at some point. So just pass both flags. * Use the newer define_from_variant.
2020-11-11msgpack-c: Add Version 3.1.1 (#19863)Dr. Christian Tacke1-0/+1
2020-11-11New package: py-cuml (#19474)Jen Herting1-0/+42
* [py-cuml] created template * [py-cuml] setup phases and added build_directory * [py-cuml] added dependencies * [py-cuml] depends on libcumlprims * [py-cuml] requiring multigpu version * [py-cuml] figuring out the best way to get concretization to happen cleanly * [py-cuml] removed singlegpu variat from libcuml * [py-cuml] depends on py-cudf * [py-cuml] depends on cupy * [py-cuml] fixed typoo * [py-cuml] depends on py-scipy * [py-cuml] depends on py-treelite * [py-cuml] py-treelite is now a variant of treelite * [py-cuml] depends on joblib * [py-cuml] depends on py-scikit-learn * [py-cuml] flake8 * [py-cuml] added homepage and description. removed fixmes * [py-cuml] updated checksum
2020-11-11Adding support to build ucx development branch (#18089)Filippo Spiga1-1/+9
* Enabling build of v1.9.x development branch. * v1.8.1 is the preferred (stable) version. * Fixing code style Co-authored-by: Filippo Spiga <fspiga@nvidia.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11New package: libcuml (#19471)Jen Herting1-0/+45
* [libcuml] created template * [libcuml] set cmake list dir * [libcuml] added some dependencies * [libcuml] adding some default cmake args * [libcuml] depends on nccl * [libcuml] temporarily disabling cuml prims building * [libcuml] building internal faiss? * [libcuml] added dependency treelite * [libcuml] depends on google_test * [libcuml] forcing single gpu per: https://github.com/rapidsai/cuml/issues/2528#issuecomment-657675957 * [libcuml] added prims? * [libcuml] adding libcumlcomms ? * Revert "[libcuml] adding libcumlcomms ?" This reverts commit 0e0765b7d4d27bdc01d54d24e8c2f9eac1cb4eb2. * Revert "[libcuml] added prims?" This reverts commit d0b1f868ea5e425cc7d1a5ce7adc642258dfc38e. * [libcuml] added varient single gpu * [libcuml] removed variant singlegpu * [libcuml] added homepage and description. removed fixmes * [libcuml] flake8 * [libcuml] cleaning up leftover commented out code * [libcuml] updated checksum added ucx dependency
2020-11-11add spack recipe for rocm version of the tensile (#19669)Sreenivasa Murthy Kolam2-0/+92
* add spack recipe for rocm version of the tensile * fix flake8 error
2020-11-11axom: devtools require llvm clang-format (#19740)Greg Becker1-16/+4
* follow-up to previous PR * build type
2020-11-11[podio] set pythonpath correctly (#19779)vvolkl1-0/+3
* [podio] put python dir in python path * Update var/spack/repos/builtin/packages/podio/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11suite-sparse: add versions 5.8.0 and 5.8.1 (#19812)Kai Torben Ohlhus1-1/+3
Update homepage URL and see release notes: - https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1 - https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0
2020-11-11arbor: Add version 0.4 (#19839)t-nojiri1-0/+3
2020-11-11Add optional deps mpmath and deap to py-libensemble (#19852)Stephen Hudson1-0/+4
2020-11-11Metall package: add v0.6 (#19854)Keita Iwabuchi1-0/+1
* Metall: add version 0.2 * Add Metall v0.3 * Update Metall package to v0.4 and v0.5. * Metall package: add v0.6
2020-11-11ace: Add version 6.5.12 (#19856)t-nojiri1-0/+1
2020-11-11openfoam: remove mplibUSER provisioning (#19861)Mark Olesen3-16/+16
- has never been used by the spack package or by the upstream package Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-11ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841)Ganesh Kumar3-6/+14
* ROCm3.9 recipe for rocblas, hipblas & rocsolver * review comments * review comments Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-10soapdenovo2: add 242 (#19849)Justin S1-0/+1
2020-11-10votca-xtp: update deps (#19850)Christoph Junghans1-0/+1
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