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2023-02-17fio: add a new version (#35522)H. Joe Lee1-0/+1
The latest is 3.33.
2023-02-16Style: black 23, skip magic trailing comma (#35351)Adam J. Stewart349-2193/+489
* Style: black 23, skip magic trailing commas * isort should use same line length as black * Fix unused import * Update version of black used in CI * Update new packages * Update new packages
2023-02-16Halide: new variants and bug fixes (#35495)Teo1-5/+78
* Update package.py Initial new stuff * Update package.py * Update package.py * Update package.py * fix targets * non-llvm backends * ooops * fix style * Somehow that was not caught? Somehow that was not caught? * style * Last fix make capitalization consistent with Halide not LLVM...
2023-02-16py-pynrrd: new package (#35505)Erik Heeren1-0/+20
2023-02-16py-cmake-format: new version, new variants (#35485)Erik Heeren1-1/+8
* py-cmake-format: new version, new variants * Update var/spack/repos/builtin/packages/py-cmake-format/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-16py-luigi: add v3.2.0 (#35507)genric1-0/+1
2023-02-16py-cufflinks: new package version with 0.17.3 (#35427)Christopher Christofi1-0/+25
* py-cufflinks: new package version with 0.17.3 * Update var/spack/repos/builtin/packages/py-cufflinks/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-16py-fiona: python is a link dep (#35516)Adam J. Stewart1-0/+1
2023-02-16added support zen4 support for gromacs (#35503)AMD Toolchain Support1-1/+4
Co-authored-by: Umashankar Sivakumar <Umashankar.Sivakumar@amd.com>
2023-02-16dakota: run acceptance tests (#29654)Andrew-Dunning-NNL1-0/+3
* dakota: run acceptance tests * dakota: updated style guide
2023-02-16fuse-overlayfs: add v1.10 (#35512)Massimiliano Culpo1-0/+1
2023-02-16rdma-core: add static variant (#35308)Andrew-Dunning-NNL1-0/+8
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-16esmf: use setup_build_environment instead of edit (#35249)Alex Richert1-52/+51
2023-02-16openssl: New version 1.1.1t (#35419)Erik Schnetter1-2/+12
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-02-16pfunit: add v4.6.3, clean up recipe (#35510)Massimiliano Culpo1-42/+75
* pfunit: add v4.6.3 * pfunit: use CMakePackage methods to define arguments * pfunit: deprecate v3.X, make a variant conditional * pfunit: simplify setting up environment variables Reading the docs it seems only v3 needs F90_VENDOR to be set * pfunit: fix option names The names set before were unused * pfunit: shared libraries seem not to be supported See https://github.com/Goddard-Fortran-Ecosystem/pFUnit/issues/308#issuecomment-874725759
2023-02-16openblas: Use more stable URL as source (#35428)Mosè Giordano1-1/+1
2023-02-16gromacs: add 2021.7, 2022.5, 2023, and some requirements (#35413)Carlos Bederián1-0/+18
2023-02-16cp2k: explicitly use C99 standard (#34957)Mosè Giordano1-0/+4
2023-02-16Add py-mlflow and its dependencies (#34463)Erik Heeren10-1/+199
* Add py-mlflow and its dependencies * mlflow: fix syntax error in package.py * py-mlflow: cleanup Process review remarks, add missing dependencies, add skinny variant * Apply suggestions from code review * Fix flake8 issues * More formatting fixes * Fix py-waitress dependency version * py-mlflow: platform-specific dependency * Update var/spack/repos/builtin/packages/py-mlflow/package.py * Update var/spack/repos/builtin/packages/py-mlflow/package.py * Process review remarks * Fix typo in dependency version * py-shap: fix dependencies * py-arrow: fix dependencies * py-slicer: remove py-setuptools explicit version * py-pyarrow: dataset variant and pass options through environment It appears there are some issues when using `pip install` instead of `python setup.py` - this setup_build_environment should fix that. * py-pyarrow: review remark * Decouple setup_build_environment from install_options * py-pyarrow: style * Bump licenses to 2023 --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch>
2023-02-16EVE 2023.02.15 update (#35493)Joel Falcou1-1/+5
2023-02-16bump mochi-margo to 0.13 (#35499)Phil Carns1-0/+1
2023-02-16thrift: add v0.17.0 (#35210)Thomas Bouvier1-10/+17
2023-02-16lammps: refactor variants, add new versions (#34011)Richard Berger1-605/+359
2023-02-16spack uninstall: follow run/link edges on --dependents (#34058)Harmen Stoppels4-0/+67
`spack gc` removes build deps of explicitly installed specs, but somehow if you take one of the specs that `spack gc` would remove, and feed it to `spack uninstall /<hash>` by hash, it complains about all the dependents that still rely on it. This resolves the inconsistency by only following run/link type deps in spack uninstall. That way you can finally do `spack uninstall cmake` without having to remove all packages built with cmake.
2023-02-16netcdf-c: add patch to enable '@4.9.0:~mpi+parallel-netcdf' (#35462)Sergey Kosukhin2-0/+14
2023-02-16Add support for star-ccm-plus v17 (#35056)rfbgo1-1/+9
2023-02-16cp2k: add v2023.1 (#35346)Rémi Lacroix1-5/+11
2023-02-16ROCm packages: add v5.4.3 release (#35478)Sreenivasa Murthy Kolam47-114/+174
2023-02-15py-pytorch-lightning: add v1.9.2Adam J. Stewart1-0/+1
2023-02-15XZ package: enable building on Windows (#35095)John W. Parent1-3/+62
* Convert XZ to multi build system * Add MSBuild builder to XZ to support Windows compatibility
2023-02-14Orca: Added required runtime libraries (#35481)Hector Martinez-Seara1-0/+5
* Update package.py Several libraries are need to be present at run time so that the code can be run in parallel. I have added them as dependencies and to LD_LIBRARY_PATH. Orca comes as a binary so the libraries cannot be added as RPATH at compilation time. Also, orca 5.0.3 was compiled against 4.1.1, not 4.1.2.
2023-02-14Add gsl-lite from JCSDA/NOAA-EMC spack fork (#35468)Dom Heinzeller1-0/+50
* Add gsl-lite from JCSDA/NOAA-EMC spack fork * Black-format var/spack/repos/builtin/packages/gsl-lite/package.py * Update maintainers and remove redundant dependency in var/spack/repos/builtin/packages/gsl-lite/package.py
2023-02-14py-matplotlib: add v3.7.0 (#35471)Adam J. Stewart1-5/+5
2023-02-14libmonitor: add version 2023.02.13 (#35474)Mark W. Krentel1-0/+1
2023-02-14fftw-api should be used for amdfftw and mkl (#35477)nkgh771-5/+6
fftw-api should be used instead of fftw because amdfftw and mkl can be linked.
2023-02-14Remove obsolete autotools patches (#35479)Sergey Kosukhin12-593/+0
* netcdf-fortran: remove obsolete Autotools patches * openmpi: remove obsolete Autotools patches * parallel-netcdf: remove obsolete Autotools patches
2023-02-14fix intel-tbb build with rocmcc (#35472)Philipp Edelmann1-1/+1
rocmcc is a clang compiler. Pass that information on to the TBB build system.
2023-02-13Add fortls (#35455)Rocco Meli1-0/+26
* fortls * Update var/spack/repos/builtin/packages/py-fortls/package.py * review * Update var/spack/repos/builtin/packages/py-fortls/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fixes * review --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-13py-radiant-mlhub: add new versions (#35470)Adam J. Stewart1-2/+6
2023-02-13py-rasterio: add v1.3.6 (#35464)Adam J. Stewart1-15/+16
2023-02-13shtools: New version 4.10.1 (#35452)Erik Schnetter1-2/+3
2023-02-13Add hdf5-vol-log version 1.4.0. (#35453)Larry Knox1-0/+1
2023-02-13Add chemfiles and py-chemfiles (#35410)Rocco Meli2-0/+53
2023-02-11py-pip: add v23.0 (#35369)Adam J. Stewart1-0/+5
2023-02-10Automated deployment to update package flux-sched 2023-02-09 (#35415)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-02-10py-pytorch-lightning: add v1.9.1 (#35445)Adam J. Stewart2-2/+9
* py-pytorch-lightning: add v1.9.1 * flake8
2023-02-10Adding checksum for 5.3.3 of RVS (#35446)renjithravindrankannath1-0/+1
Co-authored-by: sreenivasa murthy kolam <sreenivasamurthy.kolam@amd.com>
2023-02-10Maintainer username update chissg -> greenc-FNAL (#35444)Chris Green3-3/+3
2023-02-10pmdk: add the latest release 1.12.1 (#35440)H. Joe Lee1-1/+4
* pmdk: add the latest release 1.12.1 Both master and 1.12.1 require CMake. * pmdk: fix style
2023-02-10new py-amplpy package (#35359)Sangu Mbekelu1-0/+25
* new py-amplpy package * [@spackbot] updating style on behalf of sm2939 * Update package.py * Rename var/spack/repos/builtin/py-amplpy/package.py to var/spack/repos/builtin/packages/py-amplpy/package.py * Edited file to change copyright year/dependencies and changed the directory of the file --------- Co-authored-by: Sangu Mbekelu <s.mbekelu9@gmail.com>
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