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2022-01-12libogg: patch stdint include, add v1.3.5 (#28332)Nils Leif Fischer1-0/+7
Backport a patch for v1.3.4 that fixes an unsigned typedef problem on macOS: https://github.com/xiph/ogg/pull/64 Also add v1.3.5 that has this issue fixed.
2022-01-12grace: workaround for buffer overflows (#28232)Andrew W Elble1-0/+8
spack paths can be long and this overflows (at least) these buffers inside of the bundled T1lib inside of the grace distribution, leading to crashes on startup.
2022-01-12ECP-DAV: Propagate adios2 variant to paraview (#26747)kwryankrattiger1-2/+1
Depends on #26728 and #26175
2022-01-12gptune: fix build by setting compilers to mpi wrappers (#28235)Matthieu Dorier1-0/+3
2022-01-12lmod: add v8.6.5 (#28353)Harmen Stoppels1-0/+2
2022-01-12charmpp: disable pre-7.0.0 macOS builds with clang@7: (#28221)Nils Leif Fischer1-0/+10
Charm++ versions below 7.0.0 have build issues on macOS, mainly due to the pre-7.0.0 `VERSION` file conflicting with other version files on the system: https://github.com/UIUC-PPL/charm/issues/2844. Specifically, it conflicts with LLVM's `<version>` header that was added in llvm@7.0.0 to comply with the C++20 standard: https://en.cppreference.com/w/cpp/header/version. The conflict only occurs on case-insensitive file systems, as typically used on macOS machines.
2022-01-12py-torch: use conditional variants (#28242)Adam J. Stewart1-111/+77
2022-01-12package_hash: add test to ensure that every package in Spack can be unparsedTodd Gamblin1-1/+4
- [x] add option to canonical source to *not* filter multimethods - [x] add test to unparse every package in builtin
2022-01-12perl-tk: add missing dependencies (#28240)Andrew W Elble1-0/+6
2022-01-12e2fsprogs: fix non-root install (#28255)Dylan Simon1-0/+6
2022-01-12poamsa: fix build errors for gcc10+ (#28262)snehring1-0/+4
2022-01-12yarn: add runtime dependency on `node-js@4.0:` (#27654)Danny McClanahan2-0/+6
2022-01-12HDF5 GPU VFD: add new package. (#28272)H. Joe Lee1-0/+35
2022-01-12ITensor: add v3.1.10 and 'shared' variant (#28370)Melven Roehrig-Zoellner1-0/+9
2022-01-12py-async-timeout: fix checksum issue (#28329)Adam J. Stewart1-3/+3
2022-01-12libtheora: disable docs by default (#28330)Nils Leif Fischer1-1/+8
2022-01-12curl: add support for external detection (#28331)Nils Leif Fischer1-0/+32
2022-01-11Packaging: Virtual package for libllvm (#27200)kwryankrattiger2-0/+25
Add an abstraction around libllvm to allow libllvm providers to be specified for all packages. This is targeting allowing mesa to build against llvm-amdgpu or intel-llvm or llvm or any other custom llvm variant that arises for specific GPU toolchains
2022-01-11memkind: add v1.12.0 (#28306)Erik Schnetter1-0/+1
2022-01-11openblas: New version 0.3.19 (#28308)Erik Schnetter1-0/+1
2022-01-11py-aiohttp: switch to PyPI tarball (#28333)Adam J. Stewart1-5/+5
2022-01-11Open3D: add missing LLVM dep (#28334)Adam J. Stewart1-0/+2
2022-01-11ffmpeg: add v4.4.1 (#28300)Erik Schnetter1-0/+1
2022-01-11hdf5: prefer stable over experimental releases (#28340)Harmen Stoppels1-2/+4
2022-01-11mbedtls: add v2.16.12, v2.28.0 and v3.1.0(#28281)Harmen Stoppels1-14/+17
2022-01-10Deprecate Python 2 installations (#28003)Adam J. Stewart109-413/+409
* Deprecate Python 2 installations * Deprecate py-python-meep * Deprecate older easybuild backend libs * Deprecate Python 3.6 * Deprecate miniconda2
2022-01-10automake: New version 1.16.5 (#28299)Erik Schnetter1-0/+1
2022-01-10gawk: New version 5.1.1 (#28301)Erik Schnetter1-0/+1
2022-01-10gdbm: New version 1.22 (#28302)Erik Schnetter1-0/+1
2022-01-10grep: New version 3.7 (#28303)Erik Schnetter1-0/+1
2022-01-10lorene: Beautify package title in documentation (#28305)Erik Schnetter1-1/+1
2022-01-10wi4mpi: New version 3.5.0 (#28313)Erik Schnetter1-0/+1
2022-01-10wget: New version 1.21.2 (#28312)Erik Schnetter1-0/+1
2022-01-10openssl: New version 1.1.1m (#28310)Erik Schnetter1-1/+3
2022-01-10Python: set default config_vars (#28290)Adam J. Stewart1-34/+63
* Python: set default config_vars * Add missing commas * dso_suffix not present for some reason * Remove use of default_site_packages_dir * Use config_vars during bootstrapping too * Catch more errors * Fix unit tests * Catch more errors * Update docstring
2022-01-10New packages: google-crc32c and py-google-crc32c (#28293)Marcus Boden2-0/+52
2022-01-10z3: New version 4.8.14 (#28314)Erik Schnetter1-0/+1
2022-01-10hwloc: New version 2.7.0 (#28298)Erik Schnetter1-0/+1
2022-01-09New package: petaca (#28326)Peter Brady1-0/+49
* Add the petaca fortran/c package * Adopt date for version name and remove variants
2022-01-08blaspp: set BLA_VENDOR for cray (#28104)luker1-1/+7
* for Cray's libsci in blaspp, set BLA_VENDOR=all * Update package.py * Update package.py * Update package.py
2022-01-08SQLite: add new version/variant (#28204)Adam J. Stewart2-25/+27
2022-01-08openssh: New version 8.8p1 (#28325)Erik Schnetter1-0/+1
2022-01-08Damask improvements (#28178)Martin Diehl4-18/+15
2022-01-07Dalton package: add versions and variants (#28226)Jógvan Magnus Haugaard Olsen5-26/+225
* Update existing 2020.0 version to use tag * Add versions 2018.2 and master * Add patches for GCC/Intel * Use MPI compiler wrappers when +mpi * Constrain CMake build dependency (need >= 3.1) * Add variants for optional components (e.g QFIT library)
2022-01-07ELPA package: don't check threading support during build (#28227)Anton Kozhevnikov1-0/+1
./configure tries to execute an MPI test, which is not possible on most HPC platforms (if you don't build on a compute node), so this check is disabled to allow the build to proceed. Ideally we could check this by placing constraints on the MPI that Spack builds (e.g. require building a version that is guaranteed to have threading support).
2022-01-07Catch2 package: add versions 2.13.8 and 3.0.0-preview4 (#28297)Peter Brady1-1/+3
2022-01-07petsc, py-petsc4py: add versions 3.16.3 (#28277)Satish Balay2-0/+2
2022-01-07py-pyzmq: adjust constraints for python-3.9 (#28264)Glenn Johnson1-2/+3
Version 18.1 builds with python-3.9
2022-01-07NVIDIA HPC SDK package: add version 22.1 (#28288)Filippo Spiga1-0/+4
2022-01-07r-kegg-db: mark deprecated, removed from bioconductor-3.13 (#28271)Glenn Johnson1-3/+5