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2020-11-17Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30. (#19962)sameershende1-1/+18
* Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30. * Removed the depends_on clause for OpenCL and added a variant for OneAPI level_zero. * remove depends_on rocm * remove depends_on rocprofiler Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2020-11-17concretizer: modified weights for providers and matching for externalsMassimiliano Culpo2-0/+27
This commit address the case of concretizing a root spec with a transitive conditional dependency on a virtual package, provided by an external. Before these modifications default variant values for the dependency bringing in the virtual package were not respected, and the external package providing the virtual was added to the DAG. The issue stems from two facts: - Selecting a provider has higher precedence than selecting default variants - To ensure that an external is preferred, we used a negative weight To solve it we shift all the providers weight so that: - External providers have a weight of 0 - Non external provider have a weight of 10 or more Using a weight of zero for external providers is such that having an external provider, if present, or not having a provider at all has the same effect on the higher priority minimization. Also fixed a few minor bugs in concretize.lp, that were causing spurious entries in the final answer set. Cleaned concretize.lp from leftover rules.
2020-11-17concretizer: don't require a provider for virtual deps if spec is externalMassimiliano Culpo1-0/+16
This commit introduces a new rule: real_node(Package) :- not external(Package), node(Package). that permits to distinguish between an external node and a real node that shouldn't trim dependency. It solves the case of concretizing ninja with an external Python.
2020-11-17Added unit tests to for regressions on open concretizer bugsMassimiliano Culpo9-2/+144
2020-11-17Add unit tests for dependencies being patched by parentMassimiliano Culpo3-0/+6
2020-11-17tests: verify to handle dependencies conditional on other dependenciesMassimiliano Culpo1-0/+21
2020-11-17concretizer: handle conflicts with compiler ranges correctlyMassimiliano Culpo2-1/+16
As reported, conflicts with compiler ranges were not treated correctly. This commit adds tests to verify the expected behavior for the new concretizer. The new rules to enforce a correct behavior involve: - Adding a rule to prefer the compiler selected for the root package, if no other preference is set - Give a strong negative weight to compiler preferences expressed in packages.yaml - Maximize on compiler AND compiler version match
2020-11-17concretizer: added logic for preferred variantsMassimiliano Culpo1-5/+5
If preferred variants are present, they'll set the default value of a variant. Otherwise the default value is what is encoded in package.py
2020-11-17Build 7036 of Nag Fortran Compiler (#19954)Themos Tsikas1-1/+1
updated sha256sum of download .tgz
2020-11-17clfft: Fix for aarch64 (#19873)t-nojiri1-0/+3
* clfft: Fix for aarch64 * clfft: Changed the patch application conditions. * clfft: Changed Patch file
2020-11-17Metall package: add v0.7 (#19950)Keita Iwabuchi1-0/+2
* Metall: add version 0.2 * Add Metall v0.3 * Update Metall package to v0.4 and v0.5. * Metall package: add v0.6 * Metall package: add v0.7
2020-11-17Support parallel environment builds (#18131)Tamara Dahlgren1-0/+22
As of #13100, Spack installs the dependencies of a _single_ spec in parallel. Environments, when installed, can only get parallelism from each individual spec, as they're installed in order. This PR makes entire environments build in parallel by extending Spack's package installer to accept multiple root specs. The install command and Environment class have been updated to use the new parallel install method. The specs and kwargs for each *uninstalled* package (when not force-replacing installations) of an environment are collected, passed to the `PackageInstaller`, and processed using a single build queue. This introduces a `BuildRequest` class to track install arguments, and it significantly cleans up the code used to track package ids during installation. Package ids in the build queue are now just DAG hashes as you would expect, Other tasks: - [x] Finish updating the unit tests based on `PackageInstaller`'s use of `BuildRequest` and the associated changes - [x] Change `environment.py`'s `install_all` to use the `PackageInstaller` directly - [x] Change the `install` command to leverage the new installation process for multiple specs - [x] Change install output messages for external packages, e.g.: `[+] /usr` -> `[+] /usr (external bzip2-1.0.8-<dag-hash>` - [x] Fix incomplete environment install's view setup/update and not confirming all packages are installed (?) - [x] Ensure externally installed package dependencies are properly accounted for in remaining build tasks - [x] Add tests for coverage (if insufficient and can identity the appropriate, uncovered non-comment lines) - [x] Add documentation - [x] Resolve multi-compiler environment install issues - [x] Fix issue with environment installation reporting (restore CDash/JUnit reports)
2020-11-16[xerces-c] add netaccessor variant, new version (#19927)vvolkl2-2/+17
* [xerces-c] add netaccessor variant, new version * [geant4] add xerces-c netaccessor requirement * [xerces-c] format
2020-11-16[pythia6] needs CFLAGS/FFLAGS=-fcommon when %gcc@10: (#19947)Wouter Deconinck1-0/+5
2020-11-16node-js add gcc 4.8 conflict (#19945)Jordan Ogas1-0/+5
* add gcc 4.8 conflict * commit suggestion Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-16llvm: add variant: llvm_dylib (LLVM_BUILD_LLVM_DYLIB:Bool) (#19701)eugeneswalker1-0/+9
2020-11-16WRF: Add version 3.9.1.1 and improve recipe robustness (#19882)Phil Tooley8-101/+1561
* Add WRF 3.9.1.1 and improve recipe robustness * Include version 3.9.1.1 as common benchmarking workload * Fix compilation against recent glibc (detect spack installed libtirpc) * Detect and handle failed compilation (upstream use make -i) * WRF: PR changes round 1 fix build jobs fix maintainers fix pkgconfig dependency use Executable to run compile stage repair some overzealous autoformatting by black * WRF: make recipe py26 compatible * wrf: recipe review changes round 2 * more python 26 fixes
2020-11-16vgm: Switch all URLs to https (#19943)Dr. Christian Tacke1-3/+3
2020-11-16[acts] Add versions 1.2.1 and 2.0.0 (#19936)Hadrien G1-0/+2
2020-11-16texlive: Fix install of @live version (#19941)Ruben Di Battista1-1/+10
The unattended install using the pre-compiled binaries (tl-install) needs a .profile file or it goes in interactive mode blocking the install process forever
2020-11-16Trilinos: update 13.0.1 (#19944)Satish Balay1-1/+1
2020-11-16add new version py-wavelets@1.1.1 (#19930)Andreas Baumbach1-0/+3
* add new version py-wavelets@1.1.1 * also update dependencies * Update package.py
2020-11-16graphmap: Fix for aarch64 (#19935)t-nojiri1-0/+2
2020-11-16Added new versions for the py-attrs package (#19938)Matthieu Dorier1-1/+4
2020-11-16[dd4hep] switch to ninja generator to avoid running out of memory … (#19940)vvolkl1-0/+3
* [dd4hep] switch to ninja generator to avoid running out of memory while compiling ddparsers * [dd4hep] format
2020-11-16vmc: Add Version 1-0-p3 (#19942)Dr. Christian Tacke1-1/+2
2020-11-16add new version py-tifffile@2020.10.1 (#19929)Andreas Baumbach1-0/+3
* add new version py-tifffile@2020.10.1 * also update dependencies * Update package.py
2020-11-16py-numpy: Add Fujitsu Fortran compiler to compiler type. (#19858)Tomoki, Karatsu6-0/+224
* py-numpy: Add Fujitsu Fortran compiler to compiler type. py-scipy: Specify Fujitsu to fcompiler types. * Create patches applicable to each version.
2020-11-16singularity: added v3.6.4 (#19939)Dr. Christian Tacke1-1/+2
2020-11-15fix a typo in podio package script (#19928)Joseph Wang1-1/+1
2020-11-14environment-modules: add version 4.6.1 (#19926)Xavier Delaruelle1-1/+2
2020-11-14Bugfixes for lbann sw stack (#19903)Brian Van Essen4-30/+80
* Added guard for setting CUB_DIR to only when cuda variant is true * Added support for OpenMP on OSX platforms * Updated the way that LBANN, Hydrogen, and DiHydrogen handle apple-clang with OpenMP and Clang installed on OS X via brew. * Fixed bug in spec resolution * Fixed merge conflict * Fixed typo * Fixed flake8
2020-11-14Add new package: druid (#19911)darmac1-0/+26
2020-11-14bpp-phyl-omics package (#19734)ilbiondo1-0/+25
2020-11-14PAPI package: added cuda and nvml support (#19896)G-Ragghianti1-2/+10
* Added cuda support * Added cuda and nvml variants * Refined version conflict logic.
2020-11-14bpp-seq-omics package (#19733)ilbiondo1-0/+22
2020-11-14Don't use prefix.lib in tcl/tk/glib/etc (#19761)Adam J. Stewart13-84/+79
2020-11-14nbdkit: new package at v1.23.7 (#19922)darmac1-0/+26
2020-11-14ncompress: new package at v4.2.4.6 (#19923)darmac1-0/+19
2020-11-14openblas: fix to build v0.3.11 or later with Fujitsu compiler. (#19853)Tomoki, Karatsu2-2/+17
2020-11-14libjson: new package at v0.8 (#19921)darmac1-0/+24
2020-11-14iproute2: new package at v5.9.0 (#19920)darmac1-0/+25
2020-11-14httping: new package at v2.5 (#19919)darmac1-0/+27
2020-11-14hashcat: new package at v6.1.1 (#19918)darmac1-0/+26
2020-11-14argon2: new package at v20190702 (#19917)darmac1-0/+23
2020-11-14newt: new package at v0.52.21 (#19915)darmac1-0/+20
2020-11-14mathematica : added v12.1.1 (#19842)Antonio Arena1-2/+7
2020-11-14nwchem: remove patches for v6.6 (no longer supported) (#19906)Edoardo Aprà1-31/+0
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
2020-11-14ipcalc: new package at v0.2.3 (#19912)darmac1-0/+29
2020-11-13[gcc] depends_on diffutils (for all versions) (#19907)Wouter Deconinck1-0/+1