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2021-10-01mpibind: add v0.7.0 and new flux variant (#26359)Edgar Leon1-0/+14
2021-10-01 LWGRP: add v1.0.4 DTCMP: add v1.1.2 and v1.1.3 (#26362)Adam Moody2-0/+3
2021-10-01petsc,py-petsc4py add versions 3.15.5, 3.16.0 (#26375)Satish Balay2-0/+5
2021-10-01med: work around "could not find TARGET hdf5" error (#25312)Christoph Conrads2-0/+17
Fixes #24671, fixes #26051
2021-10-01ns-3-dev: add v3.31, v3.32, v3.33, and v3.34 (#26383)Ryan Mast1-0/+4
2021-10-01STRUMPACK: add v6.0.0 (#26386)Pieter Ghysels1-5/+11
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-01py-pyface: add v7.3.0 (#26389)Manuela Kuhn1-9/+26
2021-10-01py-ipywidgets: add 7.6.5 and get sources from pypi (#26393)Manuela Kuhn1-5/+10
2021-10-01Python Globus SDK (globus.org): add new package (#26395)Mihael Hategan1-0/+22
2021-10-01py-pyside: restrict version of dependency on v1.2.2 (#26396)bernhardkaindl1-1/+2
Restrict @:1.2.2 to older sphinx versions to not fail the build
2021-10-01py-pyvista: add new package (#26398)Manuela Kuhn1-0/+27
2021-10-01Add oneAPI packages from 2021.4 release (#26401)Anna Masalskaya12-0/+54
2021-10-01SLEPc: add v3.16 (#26403)Jose E. Roman1-1/+3
2021-10-01py-fury: add new package (#26404)Manuela Kuhn1-0/+39
2021-10-01boost: @1.77.0: need updated python_jam.patch for +python (#26363)bernhardkaindl2-2/+45
One hunk changed and the new patch is refreshed using quilt.
2021-09-30py-setuptools-rust: remove checksum url workaround (#25843)Tamara Dahlgren1-11/+2
2021-10-01py-shiboken2: add new package (#26390)Manuela Kuhn1-0/+35
2021-10-01vtk: fix install path to lib (#26387)Manuela Kuhn1-0/+4
2021-10-01New package: slurm-drmaa (#25424)Paul Spencer1-0/+42
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-01py-jupyterlab: add new package (#26357)Manuela Kuhn1-0/+20
2021-09-30GDB: Fix for GMP and Python (#26366)Robert Underwood1-8/+22
closes #26354 and #26358 Previously we did not pass paths for GDB or GMP and ./configure would get confused about which one to pull from. Be more specific. Built with all variants enabled and fixed the fixable versions and variants: @:8.1 were fixable by limiting python versions for these to @:3.6. 7.10.1 and 7.11(.1) were fixable to build with glibc-2.25 and newer using two long patches. gdb 7.8 and 7.9 weren't fixable as there is no backport if the fix to build these with glibc-2.25 and newer: http://lists.busybox.net/pipermail/buildroot/2017-March/188055.html Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-30[py-tabulate] added version 0.8.9 (#25974)Jen Herting1-0/+1
2021-09-30rocsolver: Tighten rocsolver package dependencies (#25917)Cory Bloor1-10/+5
- Specify CMake minimum version more precisely - Ensure rocBLAS is available at build time - Limit workaround for missing rocblas include path to the only affected version (4.1.0) - Make hip a build and link dependency - Remove hip's link dependencies Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-30sz: fix for external python sitelib (#26067)Robert Underwood1-0/+1
fixes #25973
2021-09-30gromacs-chain-coordinate: Fix calling the test suite (#26367)bernhardkaindl1-0/+8
2021-09-30Disable __skip_rocmclang again (#26187)Harmen Stoppels19-19/+19
CMake 3.21.3 disables the broken hipcc-as-rocmclang detection again. From the release notes: > The AMD ROCm Platform hipcc compiler was identifed by CMake 3.21.0 > through 3.21.2 as a distinct compiler with id ROCMClang. This has been > removed because it caused regressions. Instead: > * hipcc may no longer be used as a HIP compiler because it interferes > with flags CMake needs to pass to Clang. Use Clang directly. > * hipcc may once again be used as a CXX compiler, and is treated as > whatever compiler it selects underneath, as CMake 3.20 and below > did.
2021-09-30Add a conflict for patchelf to catch errors earlier in bootstrapping (#26373)Harmen Stoppels1-0/+2
2021-09-30dos2unix: new version 7.4.2 and enforce link with gettext (#26371)Olivier Cessenat1-0/+11
2021-09-30Move gnuconfig under the spack org (#26370)Harmen Stoppels1-3/+3
2021-09-30Added OpenJDK 17, 11 for Darwin, and set preferred to 11 (#26368)Diego Alvarez1-2/+13
2021-09-30gromacs-chain-coordinate: new package (#25426)Maciej Wójcik1-0/+79
2021-09-29Add e4s tags (#23382)Shahzeb Siddiqui94-16/+161
Add 'e4s' tags for all packages according to https://github.com/E4S-Project/e4s/blob/master/E4S_Products.md
2021-09-29linux-pam: include more official (recent) releases (#26065)acastanedam1-1/+5
2021-09-29py-snappy: add patch to fix dependencies (#26352)Valentin Volkl2-0/+16
* py-snappy: add patch to fix dependencies * Update var/spack/repos/builtin/packages/py-snappy/req.patch Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29py-jupyterlab: add 3.0.14, 3.0.18 and 3.1.14 (#26339)Manuela Kuhn1-1/+4
2021-09-29geos: fix patch versions (#26351)Valentin Volkl1-1/+1
2021-09-29py-jupyter-packaging: add 0.7.12 and 0.10.6 (#26338)Manuela Kuhn1-3/+7
* py-jupyter-packaging: add 0.7.12 and 0.10.6 * Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29cray-mvapich2: add a package to support (#26273)Howard Pritchard1-0/+59
The format of the HPE/Cray supplied module for cray-mvapich2 on HPE apollo systems is very different from the cray-mpich module supplied on Cray EX and XE systems. Recent changes to the cray-mpich package - https://github.com/spack/spack/pull/23470 broke support for cray-mvapich2 and relies now on the structure of the cray-mpich module to work properly. Rather than try to support two very different vendor mpich modules using the same spack package, just add another one specialized for the cray-mvapich2 module. Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-09-29new package(s): DAMASK (damask, damask-grid, damask-mesh) (#25692)Martin Diehl6-0/+169
2021-09-29py-qtpy: add 1.11.2 (#26343)Manuela Kuhn1-0/+2
2021-09-29ca-certificates-mozilla for openssl & curl (#26263)Harmen Stoppels3-4/+31
1. Changes the variant of openssl to `certs=mozilla/system/none` so that users can pick whether they want Spack or system certs, or if they don't want certs at all. 2. Keeps the default behavior of openssl to use certs=systems. 3. Changes the curl configuration to not guess the ca path during config, but rather fall back to whatever the tls provider is configured with. If we don't do this, curl will still pick up system certs if it finds them. As a minor fix, it also adds the build dep `pkgconfig` to curl, since that's being used during the configure phase to get openssl compilation flags.
2021-09-29New package: py-async-lru (#26328)iarspider1-0/+20
2021-09-29py-mffpy: add new package (#26345)Manuela Kuhn1-0/+21
2021-09-29py-mock: fix depends of `@:2.0.0` and bump version (#26336)bernhardkaindl1-5/+7
* py-mock: fix depends of `@:2.0.0` and bump version fixes the build of `py-gsutil`, it depends on `'py-mock@:2.0.0'`. * Update var/spack/repos/builtin/packages/py-mock/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-mock/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Apply the other requested changes * Add requested change: Add the python@3.6 for newer versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29seacas: new release and fixes for metis/parmetis (#26310)Greg Sjaardema1-7/+19
* seacas: new release and fixes for metis/parmetis * Update to add sha256 checksum for latest seacas release * Updated the documentation strings with new applications * Fixed the metis/parmetis variants and logic depending on whether mpi is enabled/disabled. (There is still a zoltan issue I need to fix, but this will at least allow seacas to be built without metis/parmetis or with +mpi+parmetis. The ~mpi+metis still needs work elsewhere.) * Enable cpup, slice, zellij in +applications
2021-09-29py-monotonic: bump version to 1.6 (#26335)bernhardkaindl1-1/+2
Fixes `spack solve py-gsutil`: It depends on 'py-monotonic@1.4:'
2021-09-29Added OpenJDK 16.0.2 (#26322)Pat Riehecky1-0/+5
2021-09-29py-netcdf4: adds parallel IO support (#26178)MichaelLaufer1-2/+7
2021-09-29Add new package: py-backports-entry-points-selectable (#26329)iarspider1-0/+21
2021-09-29py-dipy: add new package (#26331)Manuela Kuhn1-0/+38
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