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2023-11-14dd4hep: avoid IndexError in setup_run_environment (#41051)Wouter Deconinck1-1/+2
Some environments may have `dd4hep` as a concretized package without having it installed (yet). For those environments, `dd4hep` has property `libs` that is an empty list. Nevertheless, it can be added to a run environment (for example in case `dd4hep` is part of an environment). This results in an IndexError: ``` ==> Warning: couldn't load runtime environment due to IndexError: list index out of range ``` To avoid the IndexError, only prepend the `dd4hep` libs if there are actually libs found.
2023-11-14DLA-future: add v0.3.0 (#41042)Raffaele Solcà1-4/+6
2023-11-13py-numpy: add v1.26.2 (#41046)Adam J. Stewart1-0/+1
2023-11-13CMake Package: support building `~ownlibs` on Windows (#38758)John W. Parent1-11/+10
2023-11-13Release Brahma v0.0.2 (#40994)Hariharan Devarajan1-2/+5
2023-11-13gzip: deprecate <1.13 for vulnerability (#41044)heatherkellyucl1-3/+16
2023-11-13dealii: add v9.5.0, v9.5.1 (#40747)Daniel Arndt1-46/+84
* dealii: 9.5.0 * kokkos+cuda_lambda * dealii ^kokkos@3.7: require +cuda +cuda_lambda +wrapper * Added 9.5.1, try ~cgal when +cuda * Forward Cuda architecture request * Remove workaround * Try not enforcing the Kokkos compiler * Enforce using nvcc_wrapper with Trilinos+Cuda * Don't define CMAKE_*_COMPILER to point to MPI wrappers * Use the same compiler as Trilinos/Kokkos * Only check for Trilinos compiler * Disable Trilinos+Cuda * Disable Cuda support * Try CUDA build without ninja * Combined examples and examples_compile * Use f-string for cuda_arch * p -> _package * Indentation * Fix up f-string --------- Co-authored-by: Luca Heltai <luca.heltai@sissa.it> Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-11-13hdf5: add a new variant for enabling sub-filing VFD (#40804)H. Joe Lee1-1/+3
2023-11-13qwt: conflict with qt-base (Qt6) (#40883)Wouter Deconinck1-1/+3
2023-11-13epics-base: patch to avoid failure on "perl xsubpp" when "xsubpp" otherwise ↵Glenn Horton-Smith1-0/+1
works fine. (#40849)
2023-11-13riscv-gnu-toolchain: add v2023.09.13 -> v2023.10.18 (#40854)Wanlin Wang1-0/+42
2023-11-13conquest: add build system changes and library paths (#40718)Tuomas Koskela1-6/+28
2023-11-13Add license directives to various packages (#41039)Mikael Simberg14-0/+28
2023-11-13metkit: add v1.10.2 and v1.10.17 (#40668)Victoria Cherkas1-0/+4
2023-11-13superlu-dist: add v8.2.0 (#41004)Satish Balay1-0/+1
2023-11-13py-mypy: add v1.4:v1.7 (#41015)Adam J. Stewart1-12/+22
2023-11-13py-pandas: add v2.1.3 (#41017)Adam J. Stewart1-0/+1
2023-11-13GEOS: add new versions (#41030)Adam J. Stewart1-0/+10
2023-11-13likwid: add 5.3.0 version (#41008)Thomas Gruber1-0/+38
2023-11-13sundials: add license directive (#41028)David Gardner1-0/+1
2023-11-13PyTorch: allow +openmp on macOS (#41025)Adam J. Stewart2-10/+12
2023-11-11py-pynucleus: Add variant, modify dependencies (#41006)Christian Glusa1-4/+11
2023-11-11update to latest version (#40905)Matthew Archer1-0/+3
2023-11-11libEnsemble: add v1.1.0 (#40969)Stephen Hudson1-1/+2
2023-11-11Add geomdl package (#40933)Adrien Berchet1-0/+26
2023-11-11Ginkgo: 1.7.0, change compatibility, update option oneapi->sycl (#40874)Terry Cojean1-20/+44
Signed-off-by: Terry Cojean <terry.cojean@kit.edu>
2023-11-10new release (#41010)Nils Lehmann1-0/+1
2023-11-10libpspio 0.3.0 (#40953)Henri Menke1-0/+37
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10builtin.repo: fix ^mkl pattern in minor packages (#41003)Massimiliano Culpo15-16/+22
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-10fdb: add dependency on eckit later release (#40737)Victoria Cherkas1-1/+1
* depends_on("eckit@1.24.4:", when="@5.11.22:") * Update var/spack/repos/builtin/packages/fdb/package.py Co-authored-by: Alec Scott <alec@bcs.sh> * make latest tagged release the default install * revert https://github.com/spack/spack/commit/f258f46660ba5fa7d38bbaedfe21cf8cb2d7aa28 --------- Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10alquimia: apply patch for iso_c_binding to latest version (#40989)Cody Balos1-1/+1
2023-11-10pflotran: tweak for building with xsdk rocm/hip (#40990)Cody Balos1-0/+6
2023-11-10gromacs et al: fix ^mkl pattern (#41002)Massimiliano Culpo8-16/+30
The ^mkl pattern was used to refer to three packages even though none of software using it was depending on "mkl". This pattern, which follows Hyrum's law, is now being removed in favor of a more explicit one. In this PR gromacs, abinit, lammps, and quantum-espresso are modified. Intel packages are also modified to provide "lapack" and "blas" together.
2023-11-09Add adiak v0.4.0 (#40993)David Boehme1-1/+2
* Add adiak v0.4.0 * Fix style checks
2023-11-10py-black: add v23.10: (#40959)Adam J. Stewart1-7/+11
2023-11-09PyTorch: specify CUDA root directory (#40855)Adam J. Stewart1-3/+2
2023-11-09new release cpp-logger v0.0.2 (#40972)Hariharan Devarajan1-0/+1
2023-11-09Release Gotcha v1.0.5 (#40973)Hariharan Devarajan1-0/+1
2023-11-09Add symlinks for hdf5 library names when built in debug mode (#40965)Dom Heinzeller1-0/+11
* Add symlinks for hdf5 library names when built in debug mode * Only apply bug fix for debug libs when build type is Debug
2023-11-09[lcov] Add build and runtime deps necessary for lcov@2.0.0: (#40974)Kelly (KT) Thompson7-1/+113
* [lcov] Add build and runtime deps necessary for lcov@2.0.0: + Many additional Perl package dependecies are required for the new version of lcov. + Some of the new dependencies were not known to spack until now. * Style fix
2023-11-09mfem: add hipblas dependency for superlu-dist (#40981)Satish Balay1-0/+3
2023-11-09hypre: add in hipblas dependency due to superlu-dist (#40980)Satish Balay1-0/+3
2023-11-09DiHydrogen, Hydrogen, and Aluminum CachedCMakePackage (#39714)Brian Van Essen5-659/+724
2023-11-09py-macs3: adding zlib dependency (#40979)George Young1-0/+2
2023-11-09sundials: add v6.6.2 (#40920)Cody Balos1-0/+1
2023-11-09intel-oneapi-mkl: do not set __INTEL_POST_CFLAGS env variable (#40947)Satish Balay1-15/+0
This triggers warnings from icx compiler - that breaks petsc configure $ I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null $ __INTEL_POST_CFLAGS=-Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64 I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null icx: warning: -Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64: 'linker' input unused [-Wunused-command-line-argument]
2023-11-08libgit2: add python as test dependency (#40863)Sergio Sánchez Ramírez1-0/+2
Libgit2 requires python as build dependency. I was getting an error because it was falling back to system Python which is compiled with Intel compilers and thus, `libgit2` was failing because it couldn't find `libimf.so` (which doesn't make sense). Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-08podio: Add the latest tag (0.17.2) (#40956)Thomas Madlener1-1/+2
* podio: Add myself as maintainer * podio: Add 0.17.2 tag
2023-11-08libevent: always autogen.sh (#40945)Tom Vander Aa1-0/+7
The libevent release tarballs ship with a `configure` script generated by an old `libtool`. The `libtool` generated by `configure` is not compatible with `MACOSX_DEPLOYMENT_VERSION` > 10. Regeneration of the `configure` scripts fixes build on macOS. Original configure contains: ``` case $host_os in rhapsody* | darwin1.[012]) _lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;; darwin1.*) _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; darwin*) # darwin 5.x on # if running on 10.5 or later, the deployment target defaults # to the OS version, if on x86, and 10.4, the deployment # target defaults to 10.4. Don't you love it? case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in 10.0,*86*-darwin8*|10.0,*-darwin[91]*) _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; 10.[012][,.]*) _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; 10.*) _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; esac ``` After re-running `autogen.sh`: ``` case $host_os in rhapsody* | darwin1.[012]) _lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;; darwin1.*) _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; darwin*) case $MACOSX_DEPLOYMENT_TARGET,$host in 10.[012],*|,*powerpc*-darwin[5-8]*) _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; *) _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; esac ```
2023-11-08py-lightning: add v2.1.1 (#40957)Adam J. Stewart1-0/+1