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2022-03-27mochi-thallium: new package (#29722)Matthieu Dorier1-0/+60
2022-03-27h5z-zfp: fix build when ^hdf5+mpi (#29733)David M. Rogers1-3/+9
2022-03-27openmpi: switch to using main (#29725)Howard Pritchard1-8/+8
The Open MPI project has elected to name our development branch - main. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-03-26py-torchvision: adjust jpeg dependency (#29614)Glenn Johnson1-1/+1
2022-03-26llvm: add @14.0.0 (#29732)eugeneswalker1-0/+2
* llvm: add @14.0.0 * llvm@14 provides virtual
2022-03-25r-rsqlite: add v2.2.10 (#29624)Glenn Johnson1-0/+2
2022-03-25[julia] gfortran patch required for 1.7.2 (#29720)Jen Herting1-1/+1
2022-03-25Update rocm recipes for rocm-5.0.0 release (#29269)Sreenivasa Murthy Kolam48-109/+529
* update rocm recipes for ROCm-5.0.0 release * revert address sanitizer changes * fix style errors * update to the rocm recipes for 5.0.2 release * fix review comments inside the rocfft recipe * update the rocfft recipe for sqlite dependency
2022-03-25New package: ports-of-call (#29696)Richard Berger1-0/+35
2022-03-24Sherpa: add several new variants used by CMS (#29338)iarspider2-22/+85
2022-03-24vecgeom: fix install error when ~cuda (#29716)Valentin Volkl1-9/+11
2022-03-24PDC: add version 0.2 and branches (#29572)Jean Luca Bez1-1/+7
* Update package.py * Update package.py * Fixes on versions * Fix style * Remove code * Include latest version and removed code * Remove unecessary cmake dependency * Apply suggestions
2022-03-24Fix py-onnx-runtime recipe (#29646)iarspider2-11/+24
* Fix py-onnx-runtime recipe * Add missing dependencies * Update var/spack/repos/builtin/packages/py-cerberus/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Better fix for py-onnx-runtime Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-24omega-h: add v10.1.0 from fork (#29528)Cameron Smith1-0/+1
* omegah: v10.1.0 this version is from the SCOREC fork of Omega_h * prefix version with scorec Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-24add_files_to_view: flip incorrect default (#29700)Harmen Stoppels1-1/+1
2022-03-24environment views: single pass view generation (#29443)Harmen Stoppels4-1/+65
Reduces the number of stat calls to a bare minimum: - Single pass over src prefixes - Handle projection clashes in memory Symlinked directories in the src prefixes are now conditionally transformed into directories with symlinks in the dst dir. Notably `intel-mkl`, `cuda` and `qt` has top-level symlinked directories that previously resulted in empty directories in the view. We now avoid cycles and possible exponential blowup by only expanding symlinks that: - point to dirs deeper in the folder structure; - are a fixed depth of 2.
2022-03-23Update py-numpy dependency on Python to avoid build failures (#29682)Ralf Gommers1-6/+6
2022-03-23py-cffi: add compiler flags to fix build with clang (#29679)Valentin Volkl1-0/+10
* py-cffi: add compiler flags to fix build with clang For %clang@13.0.1, this avoids the ``` clang-13: warning: optimization flag '-ffat-lto-objects' is not supported [-Wignored-optimization-argument] ``` warning being turned into an error, and fixes this link error: ``` build/temp.linux-x86_64-3.10/c/_cffi_backend.o: file not recognized: file format not recognized ``` * style
2022-03-23tetgen: add v1.5.1 and v1.6.0 (#29630)Ce Qin1-1/+3
2022-03-23python: drop dependency on `file` for script check (#29513)Harmen Stoppels1-2/+6
`file` was used to detect Python scripts with shebangs, so that the interpreter could be changed from <python prefix> to <view path>. With this change, we detect shebangs using Python instead, so that `file` is no longer required.
2022-03-23kahip: add v3.12, v3.13 and v3.14 (#29648)Matthew Archer1-2/+13
Co-authored-by: cleathart <c.leathart@hotmail.co.uk>
2022-03-23variorum: update package for CCE (#29656)luker1-0/+5
CCE needs additional compiler flags.
2022-03-23libgit2: add versions 1.2.0, 1.3.0, 1.4.0, 1.4.1, 1.4.2, 1.4.3 (#29675)eugeneswalker1-0/+5
2022-03-23Use stable URLs and `?full_index=1` for all github patches (#29239)Adam J. Stewart62-184/+214
The number of commit characters in patch files fetched from GitHub can change, so we should use `full_index=1` to enforce full commit hashes (and a stable patch `sha256`). Similarly, URLs for branches like `master` don't give us stable patch files, because branches are moving targets. Use specific tags or commits for those. - [x] update all github patch URLs to use `full_index=1` - [x] don't use `master` or other branches for patches - [x] add an audit check and a test for `?full_index=1` Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-03-22ucx: add 1.12.1 (#29665)Carlos Bederián1-0/+1
2022-03-22Feature/composed boost pkg deps p1 (#28959)Abhik Sarkar19-111/+22
* This commit removes the Boost.with_default_variants to variants that packages are precisely dependant upon. This is the first batch of 20 packages with modified boost dependencies. * Style fixes * Tested bridger: works for gcc-4.9.3 and gcc-8.3.1
2022-03-22New package: Vite (#29489)François Trahay1-0/+41
2022-03-22libunwind: make v1.5.0 preferred (#29660)Massimiliano Culpo1-1/+1
Commit 26ff443 made the Gitlab pipeline failing on develop (while it was not failing in the original PR) due to errors in the fetcher. This change preserves the new versions, but will give some time for use to sync our tarball mirror for better reliability
2022-03-21libunwind: add versions 1.6.2 and 1.6-stable (#29639)Mark W. Krentel1-4/+6
2022-03-21numactl: add explicit darwin conflict (#29481)Seth R. Johnson1-0/+3
2022-03-21Add conflicts/updates for HEP tools on Summit (#29556)Seth R. Johnson3-17/+16
* Fix bad `-mfma` flag on summit * ROOT: new version and ppc conflict See https://github.com/root-project/root/issues/9297
2022-03-21geant4-data: Add latest version to make it available for geant4 (#29462)Thomas Madlener1-3/+3
2022-03-21hohqmesh: add v1.2.1 (#29454)Joe Schoonover1-0/+1
2022-03-21xapian-core: add v1.4.19 (#29583)Valentin Volkl1-1/+2
2022-03-21edm4hep: add version 0.4.1 (#29542)Valentin Volkl1-1/+3
* edm4hep: add version 0.4.1 * style
2022-03-21r-insight: add v0.16.0 (#29617)Glenn Johnson1-0/+1
2022-03-21py-pyvcf: constrain py-setuptools to 0.57 (#29610)Glenn Johnson1-1/+1
This package can not use setuptools newer than 0.57 due to needing features removed in later versions of setuptools.
2022-03-21vecgeom: fix cuda arch (#29582)Seth R. Johnson1-25/+28
* vecgeom: fix cuda arch * vecgeom: change 'options' to 'args' * vecgeom: add spec to locals * vecgeom: suppress architecture specializations when cuda
2022-03-21r-sf: add v1.0.7 (#29625)Glenn Johnson1-0/+1
2022-03-21mariadb: add version 10.8.2 (#29586)Valentin Volkl1-1/+2
2022-03-21r-yaml: add v2.3.5 (#29628)Glenn Johnson1-0/+1
2022-03-21lcgenv: add new package (#29436)haralmha1-0/+20
2022-03-21Updated configure flags in newer versions of ipopt (#29445)Felix Liu1-12/+23
2022-03-21sparrow: add new package (#29291)David M. Rogers1-0/+85
2022-03-21Barvinok: fix pet variant description, add maintainer (#29421)miheer vaidya1-1/+6
2022-03-21r-tinytex: add v0.37 (#29627)Glenn Johnson1-0/+1
2022-03-21geant4: Add external find support (#29642)Thomas Madlener1-0/+49
* geant4: Add external find support (partial) * Fix style * Fix style another time
2022-03-21r-terra: add v1.5-21 (#29626)Glenn Johnson1-0/+1
2022-03-21pumi: add v2.2.7 (#29521)Cameron Smith1-0/+1
2022-03-21hdf5: add v1.13.1 (#29514)Larry Knox1-22/+23
Also add preferred=True to all "maintenance versions".