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2016-01-25Merge branch 'develop' into features/external-packagesMatthew LeGendre386-1291/+5920
Conflicts: lib/spack/spack/cmd/mirror.py lib/spack/spack/concretize.py lib/spack/spack/config.py lib/spack/spack/spec.py lib/spack/spack/stage.py var/spack/packages/mvapich2/package.py
2016-01-21Disable patch that was merged into upstream in 1.10.2Erik Schnetter1-1/+1
2016-01-21Update OpenMPI to 1.10.2Erik Schnetter1-0/+1
2016-01-21Refactor args for Executable.__call__Todd Gamblin1-3/+3
- simplify output, error, and input redirection - `return_output=True` is now `output=str` - `return_output=True` will still work for the time being but is deprecated. - previously you could say `return_output=True` and `output=<stream>`, which wouldn't actually write to the stream. Now you actually can't specify erroneous cases since there is only one parameter with mutually exclusive options..
2016-01-21Merge pull request #384 from epfl-scitas/packages/elpaTodd Gamblin1-0/+55
added package : elpa
2016-01-21Remove constraint on dependency versionAdam J. Stewart1-1/+1
2016-01-21Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpaalalazo1-10/+24
2016-01-21Merge pull request #376 from adamjstewart/features/mvapich2Todd Gamblin1-10/+24
Various updates to MVAPICH2 package
2016-01-21Merge pull request #380 from epfl-scitas/packages/mumpsTodd Gamblin3-0/+227
Adding packages MUMPS and ScaLAPACK
2016-01-21elpa : added missing dependenciesalalazo1-1/+10
2016-01-21Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpaalalazo3-0/+227
2016-01-21Merge branch 'develop' into packages/elpaalalazo2-29/+79
2016-01-20Minor correction to install mumps+mpiNicolas Richart3-15/+37
2016-01-20openmpi : turned torque support into a variant (default false)alalazo2-29/+79
hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.
2016-01-20renaming packages to follow changes on developNicolas Richart3-0/+0
2016-01-20Adding MUMPS and ScaLAPACKNicolas Richart3-0/+205
2016-01-20elpa : commit partial package. Blocked by missing scalapackalalazo1-0/+46
2016-01-19Various updates to MVAPICH2 packageAdam J. Stewart1-10/+24
Use url_for_version function to specify urls Add version 2.2b Add dedicated MRAIL variant Fix typo Make fortran compiler flags more specific
2016-01-19Merge pull request #373 from adamjstewart/features/mpichTodd Gamblin1-0/+8
Add verbs variant, remove deprecated configure flags
2016-01-19eigen : added packagealalazo1-0/+68
2016-01-19Revert deprecated configure flagsAdam J. Stewart1-2/+2
2016-01-19Merge branch 'develop' into features/mpichAdam J. Stewart350-18/+25
* develop: (43 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. update compiler config test. add sanity check on config write as well as validation on read. Add jsonschema validation for config files. Make text wrapping off by default in tty, add a kwarg for it. add/remove/list working for new config format. Add Python 3 aliases to our argparse backport. All tests that call concretize() need to be MockPackagesTests. Fix bug in tests. Rework mirror configuration. Rework compiler configuration and simplify config.py logic. Remove mock_configs; tests no longer modify spack home directory. ...
2016-01-19Make libxcb compile with gcc 4.9.Todd Gamblin1-3/+7
2016-01-19disable parallel install for glib (found races)Todd Gamblin1-1/+1
2016-01-19disable cairo-trace, which is incompatible with older libiberty.h.Todd Gamblin1-0/+1
2016-01-19Fix LaunchMon on newer gcc versions.Todd Gamblin1-0/+10
2016-01-19Merge branch 'mplegendre-multi_pkgsrc_roots' into developTodd Gamblin350-14/+6
- This moves var/spack/packages to var/spack/repos/builtin/packages. - Packages that did not exist in the source branch, or were changed in develop, were moved into var/spack/repos/builtin/packages as part of the integration. Conflicts: lib/spack/spack/test/unit_install.py var/spack/repos/builtin/packages/clang/package.py
2016-01-18Add verbs variant, remove deprecated configure flagsAdam J. Stewart1-2/+10
2016-01-17Merge pull request #355 from eschnett/eschnett/llvmTodd Gamblin1-3/+6
LLVM depends on cmake, and does not depend on isl
2016-01-17Update cmake package to use http in all URLs.Todd Gamblin1-3/+3
2016-01-17Merge pull request #356 from eschnett/eschnett/tarTodd Gamblin1-0/+13
New package GNU tar
2016-01-17Merge pull request #353 from eschnett/eschnett/ncursesTodd Gamblin1-14/+9
Install ncurses properly
2016-01-17Merge pull request #358 from adamjstewart/features/openmpiTodd Gamblin1-15/+33
Add psm and verbs variants
2016-01-17Merge pull request #370 from eschnett/eschnett/netcdf-cmakeTodd Gamblin1-0/+1
Netcdf requires cmake >=2.8.12
2016-01-17Merge pull request #367 from eschnett/eschnett/mbedtls-cmakeTodd Gamblin1-0/+2
Mbedtls depends on cmake
2016-01-17Merge pull request #366 from eschnett/eschnett/libtool-2.4.6Todd Gamblin1-0/+1
Update libtool to 2.4.6
2016-01-17Merge pull request #365 from eschnett/eschnett/julia-0.4.3Todd Gamblin1-0/+1
Update Julia to 0.4.3
2016-01-17Merge pull request #362 from eschnett/eschnett/binutils-osxTodd Gamblin2-0/+28
Make binutils build on OS X
2016-01-17Netcdf requires cmake >=2.8.12Erik Schnetter1-0/+1
2016-01-17Mbedtls depends on cmakeErik Schnetter1-0/+2
2016-01-17Update libtool to 2.4.6Erik Schnetter1-0/+1
2016-01-17Update Julia to 0.4.3Erik Schnetter1-0/+1
2016-01-17Make binutils build on OS XErik Schnetter2-0/+28
Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables. Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.
2016-01-15Add verbs and psm variantsAdam J. Stewart1-15/+33
2016-01-15py-matplotlib: depend on freetypeBen Boeckel1-0/+1
Probably a missed dependency, but appeared on OS X.
2016-01-15py-numpy: make blas/lapack optional dependenciesBen Boeckel1-7/+10
OS X is having trouble building these libraries, so make them optional dependencies.
2016-01-15qhull: apply patch to work with libc++'s standard libraryBen Boeckel2-0/+48
Only seen on OS X with clang right now.
2016-01-14New package GNU tarErik Schnetter1-0/+13
2016-01-14LLVM depends on cmake, and does not depend on islErik Schnetter1-3/+6
Add cmake requirement. Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.
2016-01-14Install ncurses properlyErik Schnetter1-14/+9
Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories. I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).
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