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2020-02-10New package: r-watermelon (#14864)Glenn Johnson8-0/+185
This PR creates the r-watermelon package, along with dependencies. - new package: r-fdb-infiniummethylation-hg19 - new package: r-illuminahumanmethylation450kanno-ilmn12-hg19 - new package: r-lumi - new package: r-methylumi - new package: r-roc - new package: r-txdb-hsapiens-ucsc-hg19-knowngene - updated package: r-matrixstats, new version needed as a dependency
2020-02-10New package: r-suppdists (#14865)Glenn Johnson1-0/+22
2020-02-10New package: r-imager (#14866)Glenn Johnson3-0/+83
This PR adds the r-imager package and dependencies. - new package: r-bmp - new package: r-readbitmap
2020-02-10New package: r-proj (#14872)Glenn Johnson1-0/+27
2020-02-10New package: r-proj4 (#14871)Glenn Johnson1-0/+22
2020-02-10New package: r-pscbs (#14867)Glenn Johnson4-0/+82
This PR adds the r-pscbs package along with new dependencies and updates. - new package: r-aroma-light - new package: r-r-cache - updated package: r-r-oo
2020-02-10New package: r-copula (#14874)Glenn Johnson5-0/+115
This PR adds the r-copula package and dependencies. - new package: r-adgoftest - new package: r-gsl - new package: r-pspline - new package: r-stabledist
2020-02-10New package: r-gsalib (#14873)Glenn Johnson1-0/+18
2020-02-10openblas: added v3.8.0 (#14875)Kai Torben Ohlhus1-0/+1
2020-02-10xterm: added versions up to v353 (#14829)darmac1-0/+4
2020-02-10openldap: added v2.4.49 (#14815)darmac1-0/+1
2020-02-10pngquant : add depency on libpng (#14836)darmac1-0/+2
2020-02-09octave: add 5.2.0 (#14868)Kai Torben Ohlhus1-0/+1
Add version Octave 5.2.0 including sha256.
2020-02-09New package - r-rmariadb (#14762)Glenn Johnson2-0/+30
* New package - r-rmariadb This PR creates the r-rmariadb package. It also includes an update to the r-dbi package as a newer version of that is needed. * Update var/spack/repos/builtin/packages/r-rmariadb/package.py Argh, copy/paste. I wish the mirror would list itself as the archive site as well, but it just mirrors that data field from CRAN site. Thanks for catching that, I will make sure to look for that in the future. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Use mariadb-client Use mariadb-client so people can set a preferred provider. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-09intel-tbb: fix sha256 sums for 2020 versionsMark W. Krentel2-2/+47
Fixes #14850. Commit 6b1958219 added versions 2020 and 2020.1 for intel-tbb as part of updating several intel packages but added the wrong sha256 sums for the github/01org repository. Also, version 2020 is 2020, not 2020.0. Add patch makefile-debug to restore the debug targets.
2020-02-07Align default libxml2 settings for gettext and Python (#14795)Dan Lipsa1-1/+1
Python depends on gettext. Packages that depend on gettext and Python together will encounter a concretizer bug which incorrectly detects a constraint conflict. This sets the default value of +libxml2 in Python to be the same as gettext so that packages which depend on both (like mesa) can successfully concretize without adding manual constraints.
2020-02-07r-evd: new package at 2.3-3codeandkey1-0/+16
2020-02-07r-stargazer: new package at 5.2.2codeandkey1-0/+16
2020-02-07patch aws-parallelcluster so that it doesn't require enum34 (#14796)Adam J. Stewart3-5/+47
* aws-parallelcluster always depends on enum34 * Build aws-parallelcluster without enum34 * Update homepage * Add unit tests
2020-02-07NAG Compiler 7.0 (Build 7009) download checksum (#14840)Themos Tsikas1-1/+1
2020-02-07imlib2: added v1.6.0 and v1.6.1 (#14807)darmac1-1/+3
2020-02-07libconfig: added v1.7.2 (#14808)darmac1-0/+1
2020-02-07lighttpd: added versions up to v1.4.55 (#14810)darmac1-0/+5
2020-02-07maven: added versions up to v3.6.3 (#14811)darmac1-0/+4
2020-02-07mysql: added v8.0.17, v8.0.18 and v8.0.19 (#14813)darmac1-0/+3
2020-02-07pangomm: added versions up to v2.41.3 (#14816)darmac1-0/+15
2020-02-07qwt: added v6.1.3 (#14820)darmac1-0/+1
2020-02-07skopeo: added v0.1.40 (#14824)darmac1-0/+1
2020-02-07plplot: added v5.14.0 and v5.15.0 (#14817)darmac1-0/+2
2020-02-07qt: added v5.14.0 and v5.14.1 (#14821)darmac1-0/+2
2020-02-07 rclone: added new versions up to v1.51.0 (#14822)darmac1-0/+6
2020-02-07scala: added v2.12.10 and v2.13.1 (#14823)darmac1-0/+2
2020-02-07squashfs: added v4.4 (#14825)darmac1-0/+1
2020-02-07wireshark: added new versions up to v3.2.1 (#14828)darmac1-0/+4
2020-02-07thrift: added v0.12.0 and v0.13.0 (#14831)darmac1-0/+2
2020-02-07hunspell : fix 1.7.0 sha256sum (#14832)darmac1-1/+1
2020-02-06tensorflow-serving-client: add new version 2.1.0 (#14786)Figroc Chen1-1/+2
2020-02-06update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ↵Robert Mijakovic8-42/+91
(#14783) * update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote. * Fixes a typo with one of the sha256 checksum..
2020-02-06Update package.py (#14784)Benoist LAURENT1-1/+1
Fix download link
2020-02-06Added optimized version of Blis for AMD (#14780)Massimiliano Culpo2-31/+59
The Blis package has been refactored to be able to reuse the build logic for the fork of the project optimized for AMD.
2020-02-06grpc: added v1.25.0, v1.26.0 and v1.27.0 (#14781)Figroc Chen1-1/+4
2020-02-06graphicsmagick: added versions up to v1.3.34 (#14778)darmac1-0/+5
2020-02-06go: added v1.13.7 (#14777)darmac1-0/+1
2020-02-06geant4: add missing dependency on geant4-data (#14767)iarspider1-0/+1
2020-02-06gnuplot: added v5.2.8 (#14776)darmac1-0/+1
2020-02-06enchant: added v2.2.6 and v2.2.7 (#14775)darmac1-0/+2
2020-02-06blis: added v0.6.1 (#14766)darmac1-0/+1
2020-02-06cln: added v1.3.5 and v1.3.6 (#14768)darmac1-0/+2
2020-02-06gl2ps: added v1.4.0 (#14773)darmac1-0/+1
2020-02-06ghostscript: added v9.27 and v9.50 (#14772)darmac1-0/+2