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2016-10-04Adds lulesh package (#1887)Ivo Jimenez2-0/+115
2016-10-04Spack package for HPCToolkit (#1892)Pramod Kumbhar2-0/+94
* Spack package for HPCToolkit (performance analysis tool) * Correction for PR comments, make flake8 happy * update note / comments
2016-10-03cp2k : added support for libint, fixed compilation issues on elpa (#1889)Massimiliano Culpo3-5/+22
2016-10-02gcc: fix darwin dispatch/object.h header issue (#1518)Geoffrey Oxberry1-0/+14
Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that are gcc-incompatible, but compile fine with clang. The fix is to copy the offending system header from /usr/include/${REST_OF_HEADER_PATH} to ${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc- compatible features with gcc-compatible equivalents. See https://github.com/hashdist/hashstack/pull/771/files for inspiration, and http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/ for a description of the header issue.
2016-10-02Adding latest version of fenics (#1528)Nicolas Richart3-11/+44
* Adding last version of fenics and making trilinos not ambiguous on hdf5 * forcing fenics to ignore hdf5 cxx * Adding deptypes and correcting the hdf5 patch * flake8 corrections * cleaning some useless code
2016-10-02Provide newer versions of llvm (3.8.1, 3.9.0) (#1765)Kelly Thompson1-61/+91
* Provide new versions of llvm. + Provide file list and md5 hashes for 3.8.1 and 3.9.0. + Clean up indentation for the 'releases' data structure to improve consistency. * Adding a block of code to the 'resources' structure for cfe. * Merge cfe and clang resources into single entity.
2016-10-02Added hadoop, spark, and variant spark+hadoop (#1833)Alfredo Adolfo Gimenez2-0/+128
* Added hadoop, spark, and variant spark+hadoop * Docstrings, dependency types, urls, copyright * Flake8 fixes, link dependency for hadoop * Build type for spark, env problem setting JAVA_HOME
2016-10-02git: Don't link against -lrt on Darwin (#1877)Erik Schnetter1-0/+4
There is no librt on Darwin, and it's not necessary either.
2016-10-02Update PAPI to 5.5.0 (#1878)Erik Schnetter1-0/+1
2016-10-02Update tmux to 2.3.0 (#1879)Erik Schnetter1-2/+3
2016-10-02New package: libquo (#1880)Kelly Thompson1-0/+68
* New package: libquo libquo is a high-level, easy to use programming interface tailored specifically for MPI/MPI+X codes that may benefit from evolving process binding policies during their execution. QUO allows for arbitrary process binding policies to be enacted and reverted during the execution of an MPI/MPI+X application as different computational phases are entered and exited, respectively. https://github.com/losalamos/libquo * Remove use of 'which' and fix style non-conformance.
2016-10-02Add boost 1.62.0 (#1882)Bruno Turcksin1-0/+1
2016-10-02Added bash-completion package (#951)Jean-Paul Pelteret1-0/+64
2016-09-30pdt url change to download full installer tarball (#1881)Pramod Kumbhar1-6/+7
2016-09-29Add cube variant for building GUI component with qt, parallel built ↵Pramod Kumbhar1-4/+9
supported (#1525)
2016-09-29updated to latest available package and fixed installation issue (old ↵Pramod Kumbhar1-2/+8
packages are no longer available for download) (#1523)
2016-09-29added libxstream (#1454)Mitchell Devlin1-0/+50
2016-09-29Add libint package (#1264)Adam J. Stewart3-5/+127
* Add libint package * Add Intel optimization flags recommended by CP2K * Add new version and Intel compiler optimization flags for libxc * Add older version of libint * Libint depends on GMP C++ library
2016-09-28Library for manipulating grib1 and grib2 files (#1736)Robert D. French1-0/+50
Pro tips from @adamjstewart: * line too long in package description * name it grib-api instead of grib_api * depend on netcdf without reference to unnecessary constraints
2016-09-28py-pil: Protect against building with Python3. (#1868)Elizabeth Fischer1-0/+3
* py-pil: Does not build with Python3. * Set py-pillow to be the default pil provider * Update package.py * Change to comments requested by adamjstewart * Remove version constraint from extends(), avoid a Spack bug.
2016-09-28Update Qthreads to 1.11 (#1863)Erik Schnetter1-2/+3
2016-09-28Fixes #1860. Subversion builds sequentially due to race.Todd Gamblin1-0/+3
2016-09-28vim8 is out! (#1753)Robert D. French1-0/+3
* depends on ncurses for 8.0 or higher
2016-09-28Tell Mercurial where to find CA certs (#1873)Adam J. Stewart1-5/+30
2016-09-27Various updates to scipy and numpy (#1856)Adam J. Stewart2-4/+14
2016-09-27Update cdo to 1.7.2 (#1858)Michael Kuhn1-2/+2
2016-09-26Make PETSc build on Darwin (#1835)Erik Schnetter1-4/+7
Don't set cpp when building on Darwin.
2016-09-26Update OpenSSL (#1853)Erik Schnetter1-0/+1
2016-09-26some fixes to blas/lapack usage in packages (#1852)Denis Davydov12-43/+29
* atlas: fix unit test * openblas: remove symlinks; use lapack_libs.ld_flags in the test * mkl: fix openmp variant of blas/lapack libs * intel-parallel-studio: fix openmp variant of blas/lapack libs * netlib-scalapack: fix blas/lapack for multilib case (e.g. mkl) * arpack-ng: fix blas/lapack for multilib case (e.g. mkl) * petsc: explicitly specify blas/lapack * minor * cantera: fix blas/lapack usage * ipopt: fix blas/lapack usage * netlib-lapack: fix external blas usage * mfem: fix lapack/blas usage * superlu-mt: fix blas usage * flake8 fixes
2016-09-23Fix doc bugs, widen columns in the package listTodd Gamblin1-1/+1
2016-09-23a few package used in HEP including ROOT6Patrick Gartung10-0/+607
2016-09-23Remove duplicate ICU package (#1837)Adam J. Stewart6-62/+14
* Remove duplicate ICU package * Ignore deleted files during flake8 tests * Rename Boost ICU variant
2016-09-23m4: fix compilation on Sierra with GCC (#1844)Denis Davydov1-0/+6
* m4: fix compilation on Sierra with GCC * m4: check macOS version
2016-09-23Add Trilinos 12.8.1 (#1843)Bruno Turcksin1-0/+1
2016-09-23Don't require git for Julia @0.5: (#1834)Erik Schnetter1-1/+2
2016-09-23Update jemalloc to 4.2.1 (#1839)Erik Schnetter1-0/+2
2016-09-23Add libmesh, needed for some FEM applications (#1846)Robert D. French1-0/+42
2016-09-23hypre: fix a bug with blas/lapack names (#1841)Denis Davydov1-7/+2
2016-09-23Update OpenSSL (#1836)Erik Schnetter1-0/+2
This is a security update with priority "HIGH".
2016-09-22boost: fix a bug which broke it on macOS with clang+gfortran (#1816)Denis Davydov2-4/+19
* dealii: add missing python dependency * boost: fix a bug which broke it on macOS with clang+gfortran Boost was using gcc compiler instead of clang++, which lead to cryptic Undefined symbols linking errors for boost::python::objects::function_object() when building other packages against boost+python. * boost: add exceptions for intel * boost: use spack_cxx
2016-09-22Updates to CGAL and ICU4C packages (#1828)Adam J. Stewart2-26/+42
2016-09-22suitesparse: Added +fpic (for linking with shared libraries) (#1542)Elizabeth Fischer1-0/+3
2016-09-22New package "charm" for the Charm++ parallel programming framework (#1766)Erik Schnetter2-0/+191
2016-09-21Reworking of `lapack_shared_libs` and similar properties (#1682)Massimiliano Culpo27-206/+223
* Turned <provider>_libs into an iterable Modifications : - added class LibraryList + unit tests - added convenience functions `find_libraries` and `dedupe` - modifed non Intel blas/lapack providers - modified packages using blas_shared_libs and similar functions * atlas : added pthread variant * intel packages : added lapack_libs and blas_libs * find_library_path : removed unused function * PR review : fixed last issues * LibraryList : added test on __add__ return type * LibraryList : added __radd__ fixed unit tests fix : failing unit tests due to missing `self` * cp2k and dependecies : fixed blas-lapack related statements in package.py
2016-09-21Flake8 fixes.Todd Gamblin1-23/+23
2016-09-21Merge branch 'qt-osx' of git://github.com/mathstuf/spack into mathstuf-qt-osxTodd Gamblin7-12/+158
2016-09-21Add package for bedtools2 (#1572)George Hartzell1-0/+43
Add package for bedtools2, with support for v2.25.0 and v2.26.0.
2016-09-21Add package for bamtools (#1571)George Hartzell1-0/+45
bamtools provides a C++ API & command-line toolkit for working with BAM data.
2016-09-21Update espresso recipe to track change in spack internals (#1734)Mayeul d'Avezac1-1/+1
2016-09-21Add missing build dependencies to hdf package (#1812)Adam J. Stewart1-7/+7
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