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2016-07-25Merge pull request #1351 from glennpj/r_htmlwidgetsbecker3330-0/+1359
New packages - R htmlwidgets
2016-07-24New packages - R htmlwidgetsGlenn Johnson30-0/+1359
2016-07-23Add dependency type tp r- packagesGlenn Johnson29-93/+95
This PR adds the `nolink` dependency type to r- package dependencies. This is needed due to the new dependency types in Spack. A couple of packages were updated with new versions as well.
2016-07-22Merge pull request #950 from xjrc/packages/pythonTodd Gamblin2-38/+43
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
2016-07-22Adding temporary script that fixes all Python extensions w/ 'setup_py'.Joseph Ciurej1-2/+5
2016-07-22Improved the build flag construction code in the python install method.Joseph Ciurej1-27/+7
2016-07-22Fixed a bug that was causing Python installs to be affected by user config.Joseph Ciurej1-9/+31
2016-07-22Merge pull request #1336 from glennpj/rcaseTodd Gamblin9-11/+15
Fix alpha case of dependencies for some r-packages
2016-07-21Merge pull request #1230 from hartzell/update-jdkTodd Gamblin1-10/+10
Add URL and md5 for jdk-8u92.
2016-07-21Fix alpha case of dependencies.Glenn Johnson9-11/+15
A while ago I was asked to convert packages to all lowercase. That was done but some dependencies did not get converted in the specification. This commit fixes that as well as a couple of urls that need to be made explicit and a missing dependency on jdk.
2016-07-21Merge pull request #1333 from LLNL/features/no-openssl-pingingTodd Gamblin1-56/+9
Remove remote website pinging from OpenSSL
2016-07-21Merge pull request #1334 from hartzell/add-gcc-5.4.0Todd Gamblin1-0/+1
Update gcc package with info about gcc-5.4.0
2016-07-21Remove remote website pinging from OpenSSLTodd Gamblin1-56/+9
- OpenSSL no longer checks remote versions on the openssl site. - Spack is used on systems that aren't connected to the internet, and this check is probably in the wrong place and affects too many commands. We can work on figuring out a better, more configurable place to put a check like this.
2016-07-21Update with info about gcc-5.4.0George Hartzell1-0/+1
2016-07-21Fix flake8 violationsGeorge Hartzell1-0/+2
2016-07-21Fix shebang line in tcl scriptsGeorge Hartzell2-1/+20
Lmod's configure script goes to the trouble of finding tclsh. This change uses that info to rewrite the #! lines in the tcl scripts so that they call the tclsh that the configure script discovered. It needs to massage the existing shebang lines into something that the sed statement in the makefile can manipulate and it needs to add the path_to_tclsh info into the set of sed statements. Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is incorrect, a fix for another time).
2016-07-21tcl is actually a runtime dependency.George Hartzell1-1/+1
lmod uses tclsh at runtime, so adjust the depends_on accordingly (thanks @davydden!).
2016-07-21The lmod package should depend_on('tcl')George Hartzell2-0/+3
The lmod package needs a tclsh. Up until now it just assumed that one was available on the system. This change adds a depends_on('tcl') to the lmod package. The tcl package installs a tclsh script with an embedded version number (e.g. tclsh8.6) but the lmod configuration looks for tclsh. This change extends the tcl package to symlink tclshX.Y to tclsh in the tcl package bin directory.
2016-07-20MPI related changesGlenn Johnson1-26/+22
- Redid the code for setting the itac symlink for the cluster edition. - Removed the *PATH variables for MPI to avoid a conflict with other MPI environment modules. - Added missing test for `+all` when checking variants.
2016-07-20Changes as discussed in PR reviewGlenn Johnson1-11/+7
- removed unneeded entry for `debugger/gdb/intel64_mic` - set `+mpi` directory name to impi
2016-07-20Fix flake8 errors.Glenn Johnson2-18/+23
2016-07-20Setup environment for Intel Parallel StudioGlenn Johnson2-15/+168
Set up the environment for the Intel compilers and tools. This commit does the following: - Unset variables that were incorrect from the auto guess prefix inspections. - Add a RemovePath environment_modifications_formats for dotkit. - Set the module environment variables appropriate for the different variants. - Change the component logic so that the '+all' variant works. It was getting split by letter and leaving COMPONENTS empty. - Added a variant checking function. - Added NONRPM_DB_DIR to the silent.cfg so that the product database goes to the installation directory. - With the product database in prefix the code to remove the product database file from the home directory is no longer needed and was removed. - Reformat the 'tools' variant description. There are probably more variables needed for the '+tools' for the 'professional' product version but I do not have access to that.
2016-07-20Merge pull request #1323 from glennpj/rlibTodd Gamblin1-0/+8
Set environment variables for R
2016-07-20Merge pull request #1313 from sknigh/gnu-toolsTodd Gamblin3-0/+149
Added packages for GNU tools screen, datamash, and parallel
2016-07-20Merge pull request #1326 from mwilliammyers/package-openexrTodd Gamblin1-0/+54
openexr : Add new package
2016-07-20Fix indent/flake8 error.Glenn Johnson1-3/+3
2016-07-20openexr : Add new packagemwilliammyers1-0/+54
2016-07-20Set environment variablesGlenn Johnson1-0/+8
This commit adds `setup_environment` to export the libraries and headers. Fixes #1314.
2016-07-20Merge pull request #1321 from mwilliammyers/package-ilmbaseTodd Gamblin1-0/+42
ilmbase : Add new IlmBase package
2016-07-20Merge pull request #1292 from eschnett/eschnett/hdf5-default-1.10Todd Gamblin1-1/+1
Make newest HDF5 release the default version
2016-07-20Merge pull request #1303 from adamjstewart/features/armadilloTodd Gamblin1-3/+5
Updates to Armadillo package
2016-07-20Added gnu packages datamash, parallel, and screenSamuel Knight3-0/+149
2016-07-20ilmbase : Add new IlmBase packagemwilliammyers1-0/+42
2016-07-20remove FIXMEsTodd Gamblin1-2/+0
2016-07-20Merge branch 'cdo' of https://github.com/robertdfrench/spack into ↵Todd Gamblin1-0/+44
robertdfrench-cdo
2016-07-20Merge pull request #1302 from robertdfrench/adios-urlTodd Gamblin1-2/+2
Get adios from github, not NCCS
2016-07-20Merge pull request #1301 from robertdfrench/silver-searcherTodd Gamblin1-1/+3
Silver Searcher 0.32 is out
2016-07-20Merge pull request #1284 from eschnett/eschnett/py-h5py.2Todd Gamblin1-0/+1
Declare dependency of "py-h5py +mpi" on "py-mpi4py"
2016-07-20Merge pull request #1291 from eschnett/eschnett/netcdf-4.4.1Todd Gamblin1-2/+5
Update NetCDF to version 4.4.1
2016-07-20Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10Erik Schnetter1-2/+4
2016-07-19Draft CDORobert D. French1-0/+44
2016-07-19Silver Search 0.32 is outRobert D. French1-1/+3
PEP8 Love + Re-adding v0.30.0
2016-07-19Fix shared object suffix for macOSAdam J. Stewart1-2/+2
2016-07-19Updates to Armadillo packageAdam J. Stewart1-3/+5
2016-07-19Download Adios from GithubRobert D. French1-2/+2
Get adios from github, not NCCS Use correct hash, thanks Ben
2016-07-19Merge pull request #1226 from adamjstewart/features/tkinterTodd Gamblin3-15/+62
Add Tkinter support for Python
2016-07-19Merge pull request #1262 from davydden/pkg/suite_sparse_fix_blasTodd Gamblin2-13/+29
suite-sparse: enable TBB and fix Blas/Lapack libs
2016-07-18Flex requires m4Erik Schnetter1-0/+1
2016-07-18Make HDF5 1.10 the default versionErik Schnetter1-1/+1
Apply this only after NetCDF 4.4.1 is supported.
2016-07-18Update NetCDF to version 4.4.1Erik Schnetter1-0/+1
This version supports HDF5 1.10 in a backward-compatible manner.
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