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When installing setuptools from sources in Spack, we might
get into weird failures due to the way we use pip.
In particular, for Spack it's necessary to install in a
non-isolated pip environment to allow using PYTHONPATH as a
selection method for all the build requirements of a
Python package.
This can fail when installing setuptools since there might
be a setuptools version already installed for the Python
interpreter being used, with different entry points than
the one we want to install.
Installing from wheels both pip and setuptools should
harden our installation procedure in the context of:
- Bootstrapping Python dependencies of Spack
- Using external Python packages
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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On Cray systems that use Cray Data Virtualization Service (DVS),
symlinks across filesystems are not allowed, either due to a bug, or
because they're simply not POSIX compliant [1].
Spack's OpenSSL package defaults to `certs=system` which comes down to
symlinking `/etc/ssl` in the Spack install prefix, triggering this
problem, resulting in mysterious installation failures.
Instead of relying on system certs, we can just use
`ca-certificates-mozilla`, and if users really need system certs, then
they're probably better off marking OpenSSL entirely as external.
[1] https://github.com/glennklockwood/cray-dvs
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* Created package and added description
* Add py-markdown-include
* Created package
* Finished creating package
* Added py-md-environ
* Added build dependencies
* Added other deps
* Add python-markdown-math (#4)
* Created package and started to add info
* Removed unneeded global/install options
* Figured out version spec for markdown-math
* Removed type=build from unnecessary dependencies
* Removed unneeded install/global options, added version spec to dependency
* Added wscullin as interim maintainer for packages
* Fixed style issues
* Took care of trailing whitespace
* Removed comment line before imports
* Changed file charset to match other packages
* Update var/spack/repos/builtin/packages/py-ford/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-ford/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removed test dependency after review feedback
* Added new 6.1.12 version to py-ford
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add LevelZero variant to hwloc package
This permits the hwloc package to build with with support for the
Intel Level Zero low-level layer, analogous to CUDA, ROCm, and OpenCL.
* Fix typo
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solution exists (#31142)
* concretize.lp: impose a lower bound on the number of version facts if a valid version exists
fixes #30864
* Add a unit test
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large '-j'[when used with +cuda] (#31138)
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* Xerces-C: Add option to disable transcoder
* Update package.py
* Apply suggestion from review
* Flake-8
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* Adding new release for slate, blaspp, and lapackpp
* Setting release tar file hashes
* New slate release
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* llvm-amdgpu: Update the libllvm version provided
* mesa: Match configure rtti settings to the libllvm dependency
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Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
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* rocm support to build py-torch
* rocm support to build py-torch
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Co-authored-by: Robert Underwood <runderwood@anl.gov>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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- add simple-dftd3 (version 0.6.0, 0.5.1)
- add mctc-lib (version 0.3.0)
- add toml-f (version 0.2.3)
- update dftd4 (version 3.4.0, use mctc-lib as actual dependency)
- update json-fortran (version 8.*, make static library PIC)
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Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
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Add variant +gssapi to enable authentication via Kerberos through GSSAPI
When openssh is installed at sites using Kerberos, openssh needs to auth
via Kerberos through GSSAPI in order to work in such environments.
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Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
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* Update h5bench maintainers and versions
* Include version 1.1 for h5bench
* Correct release hash and set default version
* Update .tar.gz version
* Update HDF5 VOL async version and environment variable syntax
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* netpbm: run custom test command
* fix styles
* change method name
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read-only systems (#30970)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi
* fixing style issue of gptune
* changing file mode
* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant
* fixing style error
* corrected pddrive_spawn path in gptune test; enforcing gcc>7
* fixing style error
* setting environment variables when loading gptune
* removing debug print in hypre/package.py
* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR
* changing site_packages_dir to python_platlib
* not using python3.9 for py-gpy, which causes due to dropped support of tp_print
* more replacement of site_packages_dir
* fixing a few dependencies in gptune; added a gptune version
* adding url for gptune
* minor correction of gptune
* updating versions in butterflypack
* added a version for openturns
* added a url for openturns
* minor fix for openturns
* Update var/spack/repos/builtin/packages/openturns/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* added version2.1.1 for butterflypack
* fixing a tag in butterflypack
* minor fix for superlu-dist
* removed file filter for superlu-dist
* Update var/spack/repos/builtin/packages/superlu-dist/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* superlu-dist: add version detection for the testing; removing unused lines
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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