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2022-10-23helics: Add version 3.3.1 (#33475)HELICS-bot1-0/+1
2022-10-23sqlite: add 3.39.4 (#33339)Michael Kuhn1-0/+1
2022-10-23gettext: add 0.21.1 (#33333)Michael Kuhn1-0/+3
2022-10-23util-linux, util-linux-uuid: add 2.38.1 (#33342)Michael Kuhn2-1/+3
2022-10-22python: add 3.10.8, 3.9.15, 3.8.15, 3.7.15 (#33340)Michael Kuhn1-2/+6
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-10-22zlib: add 1.2.13 (#33337)Michael Kuhn1-1/+6
2022-10-22openblas@0.3.21: fix misdetection of gfortran on cray (#33444)eugeneswalker2-0/+57
2022-10-22netlib-scalapack %cce: add -hnopattern to fflags (#33422)eugeneswalker1-0/+7
2022-10-22acts: new versions (#32969)Wouter Deconinck3-20/+94
* acts: new versions In the 20.x release line, these are the changes, https://github.com/acts-project/acts/compare/v20.0.0...v20.2.0 - `option(ACTS_SETUP_ACTSVG "Build ActSVG display plugin" OFF)` introduced in v20.1.0 - `option(ACTS_USE_SYSTEM_ACTSVG "Use the ActSVG system library" OFF)` introduced in v20.1.0 - `option(ACTS_BUILD_PLUGIN_ACTSVG "Build SVG display plugin" OFF)` introduced in v20.1.0 - `option(ACTS_USE_EXAMPLES_TBB "Use Threading Building Blocks library in examples" ON)` introduced in v20.1.0 - `option(ACTS_EXATRKX_ENABLE_ONNX "Build the Onnx backend for the exatrkx plugin" OFF)` introduced in v20.2.0 - `option(ACTS_EXATRKX_ENABLE_TORCH "Build the torchscript backend for the exatrkx plugin" ON)` introduced in v20.2.0 In the 19.x release line, these are the changes: https://github.com/acts-project/acts/compare/v19.7.0...v19.9.0 - `option(ACTS_USE_EXAMPLES_TBB "Use Threading Building Blocks library in examples" ON)` introduced in v19.8.0 The new build options have not been implemented in this commit but will be implemented next. * acts: new variant svg * actsvg: new package * actsvg: style fixes * acts: new versions 20.3.0 and 19.10.0 * astsvg: depends_on boost googletest * actsvg: new version 0.4.26 (and style fix) Includes fix to build issue when +examples, https://github.com/acts-project/actsvg/pull/23 * acts: new variant tbb when +examples @19.8:19 @20.1: * acts: set ACTS_USE_EXAMPLES_TBB * acts: no need for ACTS_SETUP_ACTSVG * acts: move tbb variant to examples block * acts: ACTS_USE_SYSTEM_ACTSDD4HEP removed in 20.3 * acts: use new ACTS_USE_SYSTEM_LIBS * acts-dd4hep: new version 1.0.1, maintainer handle fixed * acts: simplify variant tbb condition
2022-10-21arborx: add new release 1.3 (#33402)Andrey Prokopenko1-2/+15
* arborx: add new release 1.3 * [@spackbot] updating style on behalf of aprokop
2022-10-21honor global spack flags (#33470)Chris White1-0/+17
2022-10-21raja@0.14.0 +rocm: add -std=c++14 to HIP_HIPCC_FLAGS (#33456)eugeneswalker1-3/+5
2022-10-21Update maintainers for NOAA/EMC-maintained libraries (#33469)Alex Richert26-26/+121
* Update maintainers for NOAA/EMC-maintained libraries * Fix line lengths * Fix line length for gptl
2022-10-21openfast: Fix package file (#33454)Jon Rood1-23/+25
* Fix openfast package file. * Fix openfast package file. * Fix typo. * [@spackbot] updating style on behalf of jrood-nrel Co-authored-by: jrood-nrel <jrood-nrel@users.noreply.github.com>
2022-10-21py-instrain: added required + optional dependency (#33465)Luke Diorio-Toth1-0/+8
* added py-instrain dependencies * fixed style * removed coverm dep until I have a working coverm package * added dep documentation
2022-10-21updated python version requirements (#33466)Luke Diorio-Toth1-4/+7
* updated python version requirements * updated sha256 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-10-21py-checkm-genome and py-pysam: bumped version and updated deps (#33449)Luke Diorio-Toth2-7/+16
* py-checkm-genome and py-pysam: bumped version and updated deps * updated setuptools dep type Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-10-21axom@0.7.0: require cmake@3.21: (#33450)eugeneswalker1-2/+2
* axom@0.7.0: require cmake@3.21: * Update var/spack/repos/builtin/packages/axom/package.py Co-authored-by: Chris White <white238@llnl.gov> Co-authored-by: Chris White <white238@llnl.gov>
2022-10-21git: new versions and deprecations (#33408)Harmen Stoppels1-3/+35
2022-10-21intel-tbb: add in versions 2021.7.0, 2021.6.0 (#33445)Satish Balay1-6/+3
2021.7.0 fixes build on linux-ubuntu20.04-skylake / oneapi@2022.2.0
2022-10-20replaced package shortbred with py-shortbred (#33404)Luke Diorio-Toth2-1/+30
* fixed version numbers to python 2 and old biopython * changed shortbred pacakge to pypi, removed python 2 version * added package description * re-added shortbred package with depreciated flag * fixed style and removed unnecessary python dep (it can't build with python 2 anyway) * removed whitespace and readded the python2.7.9+ dep * fixed style
2022-10-20Add Boost 1.80.0 (#32879)Mikael Simberg2-2/+10
* Add Boost 1.80.0 * Add conflict for Boost 1.80.0 and dealii * Add conflict for Boost 1.80 and %oneapi
2022-10-20hiop: add v0.7.0 (#33441)eugeneswalker1-0/+1
* hiop: add v0.7.0 * Update var/spack/repos/builtin/packages/hiop/package.py Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com> Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com>
2022-10-20kokkos and kokkos-kernels: add new versions (#33301)Cody Balos2-0/+5
* kokkos: add version 3.7.00 * kokkos-kernels: add versions 3.6.01 and 3.7.00 * add correct kokkos dependence
2022-10-20butterflypack: add version 2.2.2 and openmp variant (#33416)Satish Balay1-0/+6
- add conflcit with gcc < 7 - fails with MacOS sed - so add in (gnu) sed as build dependency
2022-10-20Update OpenFAST package file (#33438)Jon Rood1-17/+24
* Update OpenFAST package file. * Add comment.
2022-10-20ophidia-primitives: new package at v1.7 (#33434)SoniaScard1-0/+41
* ophidia-primitives: new package at v1.7 * ophidia-primitives: Add mantainers * ophidia-primitives: Fix style Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
2022-10-20py-rasterio: add v1.3.3 (#33428)Adam J. Stewart1-0/+1
2022-10-20spdlog: Add version 1.10.0 (#33431)Rémi Lacroix1-0/+1
2022-10-20Change scalapack to test-only dependency (#33433)G-Ragghianti1-3/+5
2022-10-20arpack-ng %cce: add -hnopattern to fflags (#33424)eugeneswalker1-0/+5
2022-10-20py-bakta: new package (#33417)Luke Diorio-Toth1-0/+36
2022-10-19singularity-eos: new version 1.6.2 (#33415)Richard Berger1-0/+1
2022-10-19Simplify TIOGA package (#33396)Jon Rood1-26/+5
* Update TIOGA package. * Add comment. * Remove cuda variant and MPI_ROOT. * Style.
2022-10-19py-pandas: add v1.5.1 (#33412)Adam J. Stewart1-0/+1
2022-10-19mpich: enable building when @3.4~cuda (#33325)Sergey Kosukhin1-1/+1
2022-10-19patch std::filesystem check as done in llnl/umpire pr#784 (#33250)eugeneswalker2-0/+34
2022-10-19umpire +rocm: use hipcc as CMAKE_CXX_COMPILER (#33377)eugeneswalker1-0/+3
2022-10-19raja +rocm: use hipcc as CMAKE_CXX_COMPILER (#33375)eugeneswalker1-0/+7
2022-10-19pilercr: new package (#33251)Luke Diorio-Toth1-0/+28
* new package * fixed style * actually building now
2022-10-19axom: python only reliably available when +python, +devtools (#33414)eugeneswalker1-1/+1
2022-10-18intel-oneapi-compilers: do not pass -Wno-unused-command-line-argument to icc ↵Robert Cohn1-27/+21
+ refactor (#33389)
2022-10-18go,gcc: Support external go compilers for Go bootstrap (#27769)Bernhard Kaindl3-10/+54
For ARM64, fallback to gccgo. (go-bootstrap@1.4 can't support ARM64)
2022-10-18papi: fix for Intel OneAPI compiler (#33225)Howard Pritchard1-0/+5
Without this patch one hits this error trying to compiler papi with Intel OneAPI: icx: error: Note that use of '-g' without any optimization-level option will turn off most compiler optimizations similar to use of '-O0' [-Werror,-Wdebug-disables-optimization] Signed-off-by: Howard Pritchard <howardp@lanl.gov> Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-10-18vsearch: add v2.22.1 (#33327)snehring1-0/+4
2022-10-18mothur: add v1.48.0 and variants (#33326)snehring1-20/+63
2022-10-18intel-oneapi-compilers: fix Python 2.7 compliance (#33383)Massimiliano Culpo1-2/+2
2022-10-17py-fiona: add v1.8.22 (#33372)Adam J. Stewart1-1/+2
2022-10-17lz4: add 1.9.4 (#33334)Michael Kuhn1-0/+1
2022-10-17Bugfix HIP and aluminum rocm build (#33344)Brian Van Essen2-7/+31
* Fixed two bugs in the HIP package recipe. The first is that the HIP_PATH was being set to the actual spec, and not the spec prefix. The second bug is that HIP is expected to be in /opt/rocm-x.y.z/hip but it's libraries can exist at both /opt/rocm-x.y.z/hip/lib and /opt/rocm-x.y.z/lib. This means that the external detection logic may find it in either and it turns out that some modules only expose one of those two locations. Logic is added to ensure that the internal HIP_PATH and associated ROCM_PATH are correctly set in both cases. * Added support for Aluminum to use the libfabric plugin with either RCCL or NCCL.
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