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2016-08-02Merge pull request #1339 from hartzell/features/add-perlbecker331-0/+75
Add perl package
2016-08-02Remove accidentally committed cabal-install bitsGeorge Hartzell2-62/+0
2016-08-02Merge pull request #1243 from davydden/pkg/atlas_urlsbecker333-9/+120
atlas: fix urls and shared libs
2016-08-02Merge pull request #864 from davydden/kdiff3becker332-2/+46
kdiff3: initial version of the package
2016-08-02Merge pull request #1360 from glennpj/pysetuptoolsdepbecker334-3/+10
Add py-setuptools dependencies to packages
2016-08-02Merge pull request #1354 from ↵becker331-0/+3
paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant
2016-08-02Remove local copy of cpanm installerGeorge Hartzell3-1075/+62
This is handled as a resource in the package now.
2016-08-02Add previous versions back into packageGeorge Hartzell3-0/+3
Following the advice of @glennpj, added the old versions back into the packages. I can install the current packages and the previous packages.
2016-08-02Touch up variant commentGeorge Hartzell1-1/+1
2016-08-02Use "resource" machinery to manage cpanm tarballGeorge Hartzell1-8/+13
Use the resource machinery to fetch/cache/unpack/... the App::cpanminus tarball. - this hardcodes the version, I can't figure out how to use a variant to hold/set the value and access it in the resource(). - change up the install to use the `with working_dir()` meme.
2016-08-02Add the std spack header to perl/package.pyGeorge Hartzell1-0/+24
Stole the example header from antlr/package.py, included it at the top of perl/package.py.
2016-08-02Make running perl's tests conditionalGeorge Hartzell1-1/+2
Make running perl's tests conditional, one must now specify the `--run-tests` flag to the `spack install` command in order to run the tests. On one system (8 core, 16GB Digital Ocean Droplet), installing without tests takes 3 minutes, with tests takes 16 minutes.
2016-08-02Make the cpanm version a variantGeorge Hartzell1-2/+5
Rather than hard-coding the verison of `cpanm` that's [optionally] installed into the core, make it a variant with a default value of '1.7042'. Also discovered that `prefix + 'bin'` is the same as `prefix.bin`, so embetter that bit of code.
2016-08-02Add perl packageGeorge Hartzell2-0/+1117
Add perl package, based on [work by justintoo](https://github.com/LLNL/spack/pull/105). He had too many things pulled into that pull request, this just adds a perl package. Support the current releases on the past three minor branches. Run perl's tests before installing. Install cpanm into the core (makes building on top of this perl *much* simpler). Controlled by a variant.
2016-08-02Update several R packages (r-shiny prereqs)George Hartzell3-6/+6
r-jsonlite 0.0.21 -> 1.0 r-mime 0.4 -> 0.5 rcpp 0.12.5 -> 0.12.6 CRAN is funny. The older versions of these packages are still available in package specific directories but the current version is not there, so I don't see any way to make the older versions work.
2016-08-02Fix flake8 issues.Glenn Johnson2-3/+6
2016-08-02kdiff3: add license blockDenis Davydov1-0/+24
2016-08-02atlas: revert to lapack 3.5.0Denis Davydov1-2/+4
2016-08-02atlas: flake8 fixesDenis Davydov1-5/+5
2016-08-02atlas: add install_testDenis Davydov3-0/+77
2016-08-02atlas: set (blas|lapack)_shared_libDenis Davydov1-0/+13
2016-08-02atlas: fix shared libs; set compilersDenis Davydov1-2/+21
2016-08-02atlas: fix urls and use lapack 3.6.0Denis Davydov1-4/+4
2016-08-02libxau: mark pkg-config as build-type dependencyDenis Davydov1-1/+1
2016-08-02kdiff3: initial version of the packageDenis Davydov1-0/+20
2016-08-02libxau: add missing dependencyDenis Davydov1-2/+2
2016-08-01Merge pull request #1343 from glennpj/r_unfilterbecker331-15/+29
R extension dependencies with compiler wrapper
2016-08-01Merge pull request #1234 from mwilliammyers/package-opencvbecker331-21/+156
Update opencv package
2016-08-01Merge pull request #1348 from glennpj/rcurlbecker331-1/+2
r-curl update and changed remote archive
2016-08-01Merge pull request #1381 from davydden/pkg/mkl_linuxbecker333-8/+23
MKL linux fixes
2016-08-01Merge pull request #1365 from hartzell/feature/add-package-for-treebecker331-0/+46
Add package for tree
2016-08-01Merge pull request #1374 from hartzell/bug/fix-jdk-import-of-distutilsbecker331-1/+1
Bug: fix jdk package's use of distutils
2016-08-01Merge pull request #1367 from adamjstewart/features/pgibecker331-0/+1
Add latest version of PGI
2016-08-01Merge pull request #1413 from mdevlin1/fixes/libxsmmbecker331-1/+1
Fixed libxsmm package
2016-08-01Merge pull request #1359 from sknigh/libhiobecker331-0/+45
added libhio package
2016-08-01fixed libxsmm makefile filterMitchell Devlin1-1/+1
2016-08-01Add latest version of PGIAdam J. Stewart1-0/+1
2016-08-01Address flake8 issueGeorge Hartzell1-0/+1
2016-08-01Add package for caskGeorge Hartzell1-0/+52
Add a package for cask, the emacs project/dependency management tool. Based on [Homebrew's formula][brew]. [brew]: https://github.com/Homebrew/homebrew-core/blob/master/Formula/cask.rb
2016-08-01Fix jdk package's use of distutilsGeorge Hartzell1-1/+1
See issue #1364. @citibeth's fix works fine.
2016-08-01Merge pull request #1322 from mdevlin1/feature/libxsmmbecker331-0/+66
Add libxsmm package
2016-08-01Add concretize_preferences testsPaul Hopkins1-0/+3
2016-08-01cp2k : added packagealalazo1-0/+161
2016-07-31Merge pull request #1407 from glennpj/r-ncdf4Todd Gamblin1-0/+56
New package - r-ncdf4
2016-07-31Merge pull request #1406 from glennpj/r-npTodd Gamblin3-0/+134
New package - r-np
2016-07-31Merge pull request #1405 from glennpj/r-surveyTodd Gamblin1-0/+47
New package - r-survey
2016-07-31Merge pull request #1404 from glennpj/r-tarifxTodd Gamblin1-0/+44
New package - r-tarifx
2016-07-31Merge pull request #1403 from glennpj/r-e1071Todd Gamblin2-0/+89
New package - r-e1071
2016-07-31Merge pull request #1402 from glennpj/r-plotrixTodd Gamblin1-0/+41
New package - r-plotrix
2016-07-31Merge pull request #1401 from glennpj/r-gdataTodd Gamblin2-0/+119
New package - r-gdata