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2022-05-17pindel: fixing compilation issues for gcc5+ (#28387)snehring2-18/+110
2022-05-17sed: add v4.8.0, set gnu_mirror_path per version (#30666)Alex Hedges1-1/+9
2022-05-17boost: constrain context-impl variant (#30654)Tim Haines1-1/+1
2022-05-17petsc: fix an error about handling a provider of Scalapack. (#30682)h-murai1-2/+1
2022-05-17cppcheck: add v2.7 (#30698)Jianshen Liu1-0/+1
2022-05-17Bazel: remove maintainer (#30697)Adam J. Stewart1-2/+0
2022-05-17autoconf-archive: Patch for nvhpc support and propagate search dirs (#30692)Chuck Atkins2-0/+37
2022-05-17runc: symlink sbin to bin to find it in $PATH (#30691)Alberto Madonna1-0/+1
2022-05-16sys-sage: new spack package (#30570)stepanvanecek1-0/+23
* sys-sage - adding new package * sys-sage: updated release verison * sys-sage: remove FIXMEs from the package * add libllvm dependency * sys-sage: remove unnecessary libllvm dependency Co-authored-by: Stepan Vanecek <stepan.vanecek@tum.de>
2022-05-16Add miopentensile-new recipe for ROCm-5.0.0 . ROCm-5.1.0 release (#29313)Sreenivasa Murthy Kolam2-0/+119
* miopentensile-new recipe for rocm-5.0.0 release * fix style checks * update the version for 5.1.0 release, avoid git download
2022-05-16py-cffconvert: new package (#30694)Michael Kuhn1-0/+25
2022-05-16sigcpp: protect from missing prefix.share folder (#30686)iarspider1-1/+2
2022-05-16arm-forge: Versions up to 22.0.1 + minor updates (#30689)Nick Forrington1-2/+23
* arm-forge: Download via HTTPS Update download URL to use HTTPS (rather than HTTP) * arm-forge: Allow +probe to depend on python3 Allow python dependency required for arm-forge+probe to be python3 as well as 2.7.x * arm-forge: Add versions up to 22.0.1
2022-05-16aws-parallelcluster: add v2.11.7 (#30685)Francesco Giordano1-1/+2
2022-05-16fix pkgconfig dependencies (#30688)Michael Kuhn2-2/+2
pkgconfig is the correct dependency, pkg-config is a provider of it.
2022-05-16libfuse: add utils variant (#30675)Michael Kuhn1-2/+10
By default, libfuse install helper programs like `fusermount3`, which are mostly useless if not installed with setuid (that is, `+useroot`). However, their presence makes it complicated to use globally installed versions, which can be combined with a Spack-installed FUSE library. In particular, on systems that have a setuid fusermount3 binary, but no libfuse-dev installed, it is nice to be able to build libfuse with Spack, and have it call the system setuid executable.
2022-05-16Correcting include and library paths using patch file for RVS (#30294)renjithravindrankannath2-1/+390
* Correcting include and library paths using patch file for RVS to build following library files in spack. libperf.so.0.0 libpebb.so.0.0 libiet.so.0.0 libgst.so.0.0 libpqt.so.0.0 libmem.so.0.0 libbabel.so.0.0 * Correcting include and library paths using patch file for RVS to build following library files in spack. libperf.so.0.0 libpebb.so.0.0 libiet.so.0.0 libgst.so.0.0 libpqt.so.0.0 libmem.so.0.0 libbabel.so.0.0 * Replacing ROCM_PATH with RPATH in the deviceid.sh before installing in Spack build. * Reducing multiple enviroment variable for HIP and HSA path
2022-05-16[AMD][rocm-openmp-extras] - Update versions 5.0.0 through 5.1.0. (#30501)estewart081-15/+51
- Removed gl dependency. - Specify clang as cmake compiler as gcc was being improperly picked up. As a result, ffi include path was needed in C/CXX flags. Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-16Apply cyclades removal patch for the llvm-amdgpu package (#29376)Sreenivasa Murthy Kolam2-0/+115
* apply cyclades removal patch for the llvm-amdgpu spack package * update the changes with develop branch
2022-05-16Extrae: add support for Intel OneAPI (#30684)Tom Vander Aa1-1/+6
2022-05-16ParaView: -no-ipo for intel builds (#18193)Ethan Stam1-0/+5
2022-05-16subversion: added apxs support (#30381)Francine Lapid1-0/+4
2022-05-16frontier-client: adapt pacparser_setmyip function to new pacparser release ↵haralmha1-0/+20
(#29936)
2022-05-16eccodes, fix jasper again (#30635)Harmen Stoppels3-11/+16
* eccodes: jasper@:2 * Revert "jasper: avoid --gc-sections / hidden symbols" This reverts commit d1bc0f39c516a7dc1e941aa4a804b7468a200b75. * bump ecbuild, drop cmake constraint for newer versions * add ecbuild dep to eccodes@develop
2022-05-16bpp-suite and deps: urls to GitHub (#30665)snehring6-8/+62
* bpp-core: moving url to github. Fixing compilation issue. * bpp-phyl: moving url to github. * bpp-seq: moving url to github * bpp-popgen: new package * bpp-suite: moving url to github, new version. * bpp-popgen: removing unused cmake_args.
2022-05-16screen: add v4.9.0, add required build deps (#30667)Alex Hedges1-0/+4
2022-05-16treesub: change jdk dependency to java, add build to java dep. type (#30672)dlkuehn1-1/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-05-16clblast: add new package (#30677)Umar Arshad1-0/+51
2022-05-16nextflow: add v22.04.1 (#30679)Diego Alvarez1-3/+4
2022-05-16openjdk: add 11.0.15+10, 17.0.3+7 (#30680)Diego Alvarez1-2/+16
2022-05-15mpich: add support for Mellanox HCOLL (#30662)Ken Raffenetti1-0/+12
Co-authored-by: Federico Ficarelli <federico.ficarelli@pm.me>
2022-05-14qt: add 5.15.4 (#30656)Michael Kuhn1-0/+1
2022-05-14[py-pyworld] Limiting numpy version. See: ↵Jen Herting1-1/+1
https://zenn.dev/ymd_h/articles/934a90e1468a05 (#30670)
2022-05-13CEED v5.0 release (#29710)Cameron Smith8-18/+180
* ceed50: add ceed 5.0.0 and pumi 2.2.7 * libceed-0.10 * ceed50: add omegah * omega-h: mpi and cuda builds work * omega-h: fix style * New package: libfms * New version: gslib@1.0.7 CEED: add some TODO items for the 5.0 release * ceed: variant name consistent with package name * LAGHOS: allow newer versions of MFEM to be used with v3.1 * LIBCEED: add missing 'install' target in 'install_targets' * CEED: address some TODO items + some tweaks * MFEM: add new variant for FMS (libfms) * CEED: v5.0.0 depends on 'libfms' and 'mfem+fms' * RATEL: add missing 'install' target in 'install_targets' * CEED: add dependency for v5.0.0 on Ratel v0.1.2 * CEED: add Nek-related dependencies for ceed@5.0.0 * CEED: v5.0.0 depends on MAGMA v2.6.2 * libCEED: set the `CUDA_ARCH` makefile parameter * libCEED: set the `HIP_ARCH` makefile parameter Co-authored-by: Jed Brown <jed@jedbrown.org> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov> Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2022-05-13New package: py-pyworld (#28641)Jen Herting1-0/+22
* espnet first build with depends * added cython>=0.24.0' and type='build' * [py-pyworld] updated copyright Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-05-13Ascent: Patch 0.8.0 for finding ADIOS2. (#30609)kwryankrattiger2-0/+102
2022-05-13concretizer: enable hash reuse with full hashTodd Gamblin5-0/+124
With the original DAG hash, we did not store build dependencies in the database, but with the full DAG hash, we do. Previously, we'd never tell the concretizer about build dependencies of things used by hash, because we never had them. Now, we have to avoid telling the concretizer about them, or they'll unnecessarily constrain build dependencies for new concretizations. - [x] Make database track all dependencies included in the `dag_hash` - [x] Modify spec_clauses so that build dependency information is optional and off by default. - [x] `spack diff` asks `spec_clauses` for build dependencies for completeness - [x] Modify `concretize.lp` so that reuse optimization doesn't affect fresh installations. - [x] Modify concretizer setup so that it does *not* prioritize installed versions over package versions. We don't need this with reuse, so they're low priority. - [x] Fix `test_installed_deps` for full hash and new concretizer (does not work for old concretizer with full hash -- leave this for later if we need it) - [x] Move `test_installed_deps` mock packages to `builtin.mock` for easier debugging with `spack -m`. - [x] Fix `test_reuse_installed_packages_when_package_def_changes` for full hash
2022-05-13Fix how environments are read from lockfileScott Wittenburg1-0/+1
2022-05-13sarus: fix dependency on boost (#30659)Teodor Nikolov1-1/+1
The program_options variant is disabled by default in Boost and has to be enabled explicitly.
2022-05-13libtree: add v3.0.4, v3.1.1 (#30658)Harmen Stoppels1-0/+2
2022-05-12silo: Cleanup the HDF5 dependency specs (#30593)Chuck Atkins1-4/+16
2022-05-12vtk: fix hdf5 version specification (#30592)Chuck Atkins1-2/+12
2022-05-12py-scikit-learn: add v1.1.0 (#30649)Adam J. Stewart1-2/+2
2022-05-12atompaw: add version 4.2.0.0 (#30650)Simon Pintarelli1-0/+1
2022-05-12Revert "atompaw: add new package (#30619)" (#30647)Massimiliano Culpo1-41/+0
This reverts commit 12b0278f08c5557c8c458fdbf4886c5f67aa40c9.
2022-05-12soapdenovo-trans: add v1.0.5 (#30629)snehring1-2/+5
2022-05-12code-server: add new versions (#30646)Max Zeyen1-8/+44
2022-05-12py-netcdf4: add v1.5.8 (#30598)Adam J. Stewart1-3/+13
2022-05-12precice: add v2.4.0 (#30633)Frédéric Simonis1-5/+17
2022-05-12fakexrandr: remove 'ldconfig' from Makefile (#30632)Qian Jianhua1-2/+2