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2016-06-17Add additional Astropy dependenciesAdam J. Stewart3-7/+89
2016-06-17Remove version constraintsAdam J. Stewart5-13/+9
2016-06-17Allow packages to buildAdam J. Stewart4-13/+9
2016-06-17Add py-sncosmo packageAdam J. Stewart6-22/+234
2016-06-16Add 'jdk' as a dependency.Glenn Johnson1-0/+1
Add jdk as a dependency so that R has support for java and allow packages that need java to work.
2016-06-16Add list_url for old versions.Glenn Johnson3-10/+12
2016-06-16Make install comment consistent with actual call.Glenn Johnson1-1/+1
2016-06-16Add validator for bioconductor packagesGlenn Johnson1-0/+13
This commit adds a validator function to make sure the versions of R and bioconductor are in sync.
2016-06-16Tweak how R packages are built.Glenn Johnson5-10/+14
Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.
2016-06-16Fix flake8 errorsGlenn Johnson2-3/+4
Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre.
2016-06-16Update version of BiocGenericsGlenn Johnson1-1/+1
The BioConductor repositories only keep the most recent version so this has to be bumped.
2016-06-16Use configure_args rather than optionsGlenn Johnson1-8/+8
Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide.
2016-06-16Add variant for UTF support to pcreGlenn Johnson1-1/+9
This will build PCRE with UTF support by default. That seems to be reasonable for most environments.
2016-06-16Clean up R extensionsGlenn Johnson4-8/+16
Run the existing R extension packages through autopep8 to clean up.
2016-06-16Add version 3.3.0 of RGlenn Johnson1-0/+3
This commit adds the 3.3.0 version of R and adds dependencies on curl and pcre.
2016-06-16Clean up R package filesGlenn Johnson1-25/+19
- remove unused imports - apply pep8 - reformat text strings
2016-06-16Merge pull request #944 from adamjstewart/features/bertiniTodd Gamblin1-0/+50
Add bertini package
2016-06-16Merge pull request #962 from adamjstewart/features/hplTodd Gamblin1-0/+119
Add HPL benchmark package
2016-06-16Merge branch 'features/newarch' into developTodd Gamblin18-34/+345
Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py
2016-06-16qa : fixed flake8 issuesalalazo1-6/+9
2016-06-16espresso : updated to 5.4.0, added Parallel=Falsealalazo1-0/+9
2016-06-16fix up packages for new architecture.Todd Gamblin4-9/+9
2016-06-16Add libxcb dependencies. Fix up packages to get py-basemap and stat to build.Todd Gamblin8-6/+170
2016-06-15Update OpenMPI to 1.10.3Erik Schnetter1-0/+1
2016-06-15mpich based providers : shortened filter_compilersMassimiliano Culpo2-32/+9
2016-06-15Remove MPI support, fix INCLUDE filtersAdam J. Stewart1-21/+16
2016-06-15More template filteringAdam J. Stewart1-3/+23
2016-06-15Filter compilersAdam J. Stewart1-0/+24
2016-06-15Psi4 tweaksAdam J. Stewart1-15/+7
2016-06-15Add Psi4 packageAdam J. Stewart2-1/+85
2016-06-15trilinos: specify superlu-dist version dependencyDenis Davydov1-1/+2
2016-06-15flake8 fixes for dealiiDenis Davydov1-17/+16
2016-06-15flake8 fixes for slepcDenis Davydov1-3/+3
2016-06-15flake8 fixes for petscDenis Davydov1-19/+26
2016-06-15flake8 fixes for superlu-distDenis Davydov1-15/+21
2016-06-15slepc: build by default with ArpackDenis Davydov1-1/+1
2016-06-15dealii: specify petsc/slepc version dependenciesDenis Davydov1-2/+2
2016-06-15trilinos: add 12.6.2 and 12.6.3Denis Davydov1-0/+2
2016-06-15slepc: add 3.6.3 and 3.7.1; specify petsc version dependencyDenis Davydov1-1/+4
2016-06-15petsc: add 3.6.4 and 3.7.2; specify superlu-dist version dependencyDenis Davydov1-1/+4
2016-06-15superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred versionDenis Davydov1-7/+6
2016-06-15Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usrTodd Gamblin1-1/+1
Do not pass "/usr" or "/usr/local" as path to configure
2016-06-15Merge pull request #1058 from eschnett/eschnett/bloscTodd Gamblin2-0/+257
Add packages c-blosc and hdf5-blosc
2016-06-15Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fixTodd Gamblin1-34/+43
Add variant for boost graph and parallel graph
2016-06-15Merge pull request #1040 from KineticTheory/pkg-trilinosTodd Gamblin1-84/+123
Make Boost an optional feature of Trilinos.
2016-06-15Merge pull request #1037 from KineticTheory/developTodd Gamblin1-3/+8
Package serf also depends on zlib.
2016-06-15Merge pull request #1031 from opoplawski/pcreTodd Gamblin2-0/+15
Add patch to compile pcre with Intel 16.0.3 compiler
2016-06-15qa : fixed flake8 issuesalalazo2-28/+39
2016-06-15openmpi, mvapich2, mpich : filtered out "--Wl,--enable-new-dtag" in ↵alalazo3-57/+62
wrappers, as it turns RPATH into RUNPATH Apart from that turned `os.path.join` into `join_path` and `os.environ` into `env` in the packages
2016-06-14Install shared libraries correctly on LinuxErik Schnetter1-10/+18
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