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2016-07-15Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo206-336/+641
features/install_with_phases Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py
2016-07-15Merge pull request #378 from mathstuf/dep-typesTodd Gamblin203-314/+535
dependency types
2016-07-14Fix package name bug.Todd Gamblin1-1/+1
2016-07-14added py-pydatalog packageGregory Becker1-0/+38
2016-07-14Add GNU Prolog package.Todd Gamblin1-0/+41
2016-07-14foam-extend, sundials: add cmake as a builddepBen Boeckel2-0/+2
The sundials doesn't use CMake directly, but it is referenced in the patch step. I suspect it calls CMake somewhere else in its build system.
2016-07-14cantera: use nolink for python module dependenciesBen Boeckel1-4/+4
Unsure about this, but this is probably true.
2016-07-14lua: bring in run deps of build and run depsBen Boeckel1-1/+1
2016-07-14R: look only at run dependencies of build and run depsBen Boeckel1-1/+1
2016-07-14python: setup the dependent environment properlyBen Boeckel1-1/+1
We want the run dependencies of all build and run dependencies of the current package.
2016-07-14msgpack-c: add missing dependency on cmakeBen Boeckel1-0/+2
2016-07-14py-matplotlib: require py-setuptools to buildBen Boeckel1-0/+1
2016-07-14deptypes: mark deptypes in packagesBen Boeckel183-305/+329
2016-07-14spack: introduce dependency typesBen Boeckel14-1/+191
deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.
2016-07-14darwin: explicitly use the 'when=' kwargBen Boeckel3-3/+3
2016-07-14doxygen: add missing importBen Boeckel1-0/+2
2016-07-13mkl: set MKLROOTDenis Davydov1-0/+7
2016-07-13Flake8Adam J. Stewart1-19/+19
2016-07-13Filter both makefiles to allow intel to build bzip2Adam J. Stewart1-3/+8
2016-07-13package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as ↵alalazo3-17/+11
examples
2016-07-13p4est: flake8Denis Davydov1-11/+12
2016-07-13mkl: add provide blas/lapackDenis Davydov1-0/+23
2016-07-13p4est: use run_tests instead of a variantDenis Davydov1-11/+6
2016-07-13package.py : hdf5 and lzo have examples of run_testsalalazo2-14/+9
2016-07-13package.py : extra arguments, fixed inheritance issuealalazo2-21/+26
- added attribute to hold extra arguments in PackageBase instances - fixed registration from within packages - examples : hdf5, lzo
2016-07-13package : added EditableMakefilealalazo4-33/+19
Modifications : - added EditableMakefile to PackageBase subclasses - astyle modified as an example - preliminary hook to stop at a certain phase of install
2016-07-13package : added a stub for AutotoolsPackage, examples in szip and swiftsimalalazo2-29/+21
2016-07-13package : introduced InstallPhase, added decorators for prerequisites and ↵alalazo1-0/+4
sanity_checks of phases
2016-07-12Add URL and md5 for jdk-8u92.George Hartzell1-0/+2
Installed on Centos7.2 system, `java -version` works.
2016-07-12New package - r-ggvisGlenn Johnson5-0/+237
Bring in ggvis and dependencies. GGvis is an implementaion of the 'Grammar of Graphics', combined with shiny.
2016-07-12Merge pull request #1223 from glennpj/tidyrTodd Gamblin1-0/+49
New package - r-tidyr
2016-07-12Merge pull request #1222 from glennpj/libxml2Todd Gamblin1-4/+0
Use the site_packages_dir from the Python class
2016-07-11New package - r-tidyrGlenn Johnson1-0/+49
Tools for changing the layout of data sets.
2016-07-11Remove import of osGlenn Johnson1-1/+0
The import of `os` is no longer needed.
2016-07-11Use the site_packages_dir from the Python classGlenn Johnson1-3/+0
It is not necessary to set site_packages_dir in this package as it is already provided by the Python package class.
2016-07-11Merge pull request #1207 from davydden/pkg/dealii_update_petsc37Todd Gamblin1-93/+107
dealii: update for petsc37
2016-07-11Fix flake8 errorGlenn Johnson1-2/+2
2016-07-11Fix error reported on Google Groups listGlenn Johnson1-2/+6
Fixes the reported `TypeError: not enough arguments for format string` error.
2016-07-11Merge pull request #1218 from glennpj/dplyrTodd Gamblin4-0/+182
New package - r-dplyr
2016-07-11New package - r-lubridateGlenn Johnson1-0/+47
Functions to work with date-times and timespans.
2016-07-11New package - r-dplyrGlenn Johnson4-0/+182
This brings in dplyr and dependencies.
2016-07-11Merge pull request #1214 from glennpj/rfilterTodd Gamblin1-0/+24
Filter compilers for R
2016-07-11Filter compilers for RGlenn Johnson1-0/+24
This adds a filter_compilers function to have the Makeconf file for R point to the actual compilers rather than the spack wrappers. Also added version 3.3.1.
2016-07-11Merge pull request #1206 from davydden/pkg/slepc_371_fixTodd Gamblin2-5/+42
slepc: fix install_name for binaries on macOS for 3.7.1
2016-07-11Fix typo in Octave variant suitesparsePaul Hopkins1-1/+1
2016-07-11dealii: fix directory structureDenis Davydov1-0/+10
2016-07-11dealii: flake8 fixesDenis Davydov1-2/+4
2016-07-11dealii: run tests only when self.run_tests=trueDenis Davydov1-87/+88
2016-07-11dealii: add petsc/slepc 3.7 supportDenis Davydov1-6/+7
2016-07-11slepc: fix install_name for binaries on macOS for 3.7.1Denis Davydov2-5/+42
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