| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2016-08-05 | Merge pull request #1452 from hartzell/feature/add-package-for-samtools | becker33 | 4 | -29/+101 | |
| Add package for samtools | |||||
| 2016-08-05 | Samtools depends on htslib from 1.3.1 onward | George Hartzell | 1 | -2/+2 | |
| Samtools used to (before 1.3.1) include it's own copy of htslib. Going forward, it needs to use the standalone htslib. | |||||
| 2016-08-05 | Merge pull request #1453 from hartzell/feature/add-package-for-seqtk | becker33 | 1 | -0/+43 | |
| Add package for seqtk | |||||
| 2016-08-05 | Merge pull request #1450 from hartzell/feature/add-package-for-bwa | becker33 | 1 | -0/+52 | |
| Add package for bwa | |||||
| 2016-08-05 | Merge pull request #1442 from suraia/update-scorep-2.0 | becker33 | 3 | -21/+39 | |
| Update Score-P to 2.0 Most likely this can be generalized to link against older versions of dependencies, but it looks good for now. | |||||
| 2016-08-04 | Flake8 cleanup | George Hartzell | 1 | -4/+5 | |
| 2016-08-04 | Add Trilinos 12.6.4 (#1447) | Bruno Turcksin | 1 | -0/+1 | |
| 2016-08-04 | Add package for seqtk | George Hartzell | 1 | -0/+43 | |
| Seqtk is a tool for working with fast[aq] files. | |||||
| 2016-08-04 | Add package for bcftools | George Hartzell | 1 | -0/+43 | |
| 2016-08-04 | Update samtools to support v1.3.1 | George Hartzell | 2 | -29/+16 | |
| Update the samtools package to support v1.3.1, which - now uses configure script; and - now depends on external htslib package. The dependency on mpc seems to have been bogus, it's never linked in, nor is it mentioned in the source tree. I *do* have a version in /usr/lib64, but ldd does not sure it being linked in either.... By depending on 'ncurses' I can do away with the need for the patch. | |||||
| 2016-08-04 | Add package for htslib | George Hartzell | 1 | -0/+41 | |
| Htslib was pulled out of samtools and made into a standalone thing. This commit adds a packag for it, in support of the samtools package. | |||||
| 2016-08-04 | Make flake8 happy (long lines) | George Hartzell | 1 | -0/+52 | |
| 2016-08-04 | flake8 fixes | Michael Kuhn | 3 | -20/+27 | |
| 2016-08-04 | Merge pull request #1437 from jgalarowicz/update-xercesc | becker33 | 1 | -4/+5 | |
| Update the version of xerces-c, where the developers remove the old v… | |||||
| 2016-08-04 | Merge pull request #1438 from jgalarowicz/update-libmonitor | becker33 | 1 | -5/+3 | |
| Update libmonitor to use its new github location, it does not exist w… | |||||
| 2016-08-04 | Merge pull request #1443 from davydden/pkg/dealii_python | becker33 | 1 | -2/+15 | |
| dealii: add optional python bindings | |||||
| 2016-08-04 | Merge pull request #1431 from hartzell/feature/add-package-for-unison | becker33 | 2 | -0/+94 | |
| Add package for unison (and ocaml) | |||||
| 2016-08-04 | dealii: add optional python bindings | Denis Davydov | 1 | -2/+15 | |
| 2016-08-04 | Update Score-P to 2.0 | Michael Kuhn | 3 | -1/+12 | |
| 2016-08-03 | Fix #1429: Remove git dep from gettext; break circular dependency. | Todd Gamblin | 1 | -4/+0 | |
| - It's not really a circular dependency -- git is a run dependency of gettext - We can revert this change when Spack is smart enough to make git a run dependency and build it. | |||||
| 2016-08-03 | Fix flake8 errors for: Update libmonitor to use its new github location, it ↵ | Jim Galarowicz | 1 | -2/+1 | |
| does not exist where the package file now points to. | |||||
| 2016-08-03 | Fix flake8 errors for Update the version of xerces-c, where the developers ↵ | Jim Galarowicz | 1 | -2/+3 | |
| remove the old version, so there is no fallback. | |||||
| 2016-08-03 | Update libmonitor to use its new github location, it does not exist where ↵ | Jim Galarowicz | 1 | -3/+2 | |
| the package file now points to. | |||||
| 2016-08-03 | Update the version of xerces-c, where the developers remove the old version, ↵ | Jim Galarowicz | 1 | -2/+2 | |
| so there is no fallback. | |||||
| 2016-08-03 | Flake8 cleanup | George Hartzell | 1 | -0/+1 | |
| 2016-08-03 | Merge pull request #1382 from KineticTheory/gktplus3-deps | Todd Gamblin | 5 | -9/+64 | |
| GTK+3: Provide updates to package dependencies. | |||||
| 2016-08-03 | Add package for unison | George Hartzell | 1 | -0/+50 | |
| Add package for unison (the file synchronizer). Needs the ocaml compiler to build. | |||||
| 2016-08-03 | Add package for ocaml compiler | George Hartzell | 1 | -0/+43 | |
| Installs the ocaml compiler. | |||||
| 2016-08-03 | Provide minor updates after code review | Kelly (KT) Thompson | 1 | -4/+2 | |
| + Always depend on the gettext package. This simplifies the logic and I no longer need to 'import sys' + Only apply the patch for the older version of glib. | |||||
| 2016-08-03 | Merge pull request #1378 from LLNL/bugfix/gh-1324-intel-parallel-studio | becker33 | 1 | -1/+32 | |
| Bugfix/gh 1324 intel parallel studio | |||||
| 2016-08-03 | Merge pull request #1156 from adamjstewart/features/py-meep | becker33 | 16 | -47/+685 | |
| Add py-meep package and dependencies Merging to add the gettext support, will submit a separate issue for the LD_LIBRARY_PATH issue with MPI and py-meep | |||||
| 2016-08-03 | Merge pull request #1420 from epfl-scitas/packages/plumed | becker33 | 1 | -0/+84 | |
| plumed : added package | |||||
| 2016-08-03 | qa : flake8 issues | alalazo | 1 | -5/+7 | |
| 2016-08-02 | One more formatting change to make flake8 happy. | Kelly (KT) Thompson | 1 | -1/+1 | |
| 2016-08-02 | Merge pull request #1233 from hartzell/add-nextflow | becker33 | 1 | -0/+42 | |
| First cut package for nextflow, has issues | |||||
| 2016-08-02 | arpack-ng: fix blas/lapack libraries | Denis Davydov | 1 | -9/+30 | |
| 2016-08-02 | Merge pull request #1366 from hartzell/feature/add-package-for-ack | becker33 | 1 | -0/+51 | |
| Add package for ack | |||||
| 2016-08-02 | Merge pull request #1421 from hartzell/feature/add-package-for-texlive | becker33 | 1 | -0/+57 | |
| Add package for texlive | |||||
| 2016-08-02 | Merge pull request #1339 from hartzell/features/add-perl | becker33 | 1 | -0/+75 | |
| Add perl package | |||||
| 2016-08-02 | Remove accidentally committed cabal-install bits | George Hartzell | 2 | -62/+0 | |
| 2016-08-02 | Merge pull request #1243 from davydden/pkg/atlas_urls | becker33 | 3 | -9/+120 | |
| atlas: fix urls and shared libs | |||||
| 2016-08-02 | Merge pull request #864 from davydden/kdiff3 | becker33 | 2 | -2/+46 | |
| kdiff3: initial version of the package | |||||
| 2016-08-02 | Merge pull request #1360 from glennpj/pysetuptoolsdep | becker33 | 4 | -3/+10 | |
| Add py-setuptools dependencies to packages | |||||
| 2016-08-02 | Merge pull request #1354 from ↵ | becker33 | 1 | -0/+3 | |
| paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant | |||||
| 2016-08-02 | Remove local copy of cpanm installer | George Hartzell | 3 | -1075/+62 | |
| This is handled as a resource in the package now. | |||||
| 2016-08-02 | Add previous versions back into package | George Hartzell | 3 | -0/+3 | |
| Following the advice of @glennpj, added the old versions back into the packages. I can install the current packages and the previous packages. | |||||
| 2016-08-02 | Remove useless `def unpack` | George Hartzell | 1 | -3/+0 | |
| Before I learned that I was stumbling over a real but (#1308), I thought I needed to arrange for the fetcher to skip the unpack step. This commit removes the useful `def unpack`. | |||||
| 2016-08-02 | Flake8 cleanup. | George Hartzell | 1 | -1/+2 | |
| 2016-08-02 | Touch up variant comment | George Hartzell | 1 | -1/+1 | |
| 2016-08-02 | Use "resource" machinery to manage cpanm tarball | George Hartzell | 1 | -8/+13 | |
| Use the resource machinery to fetch/cache/unpack/... the App::cpanminus tarball. - this hardcodes the version, I can't figure out how to use a variant to hold/set the value and access it in the resource(). - change up the install to use the `with working_dir()` meme. | |||||
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index : spack | |
| A flexible package manager that supports multiple versions, configurations, platforms, and compilers. | root |
| summaryrefslogtreecommitdiff |