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2018-03-30Fix log4cxx dependencies (#7570)healther1-4/+3
* Add ignore_conflicts to package activation includes: * with_dependency flag for do_activate * ignore_conflicts flag for do_activate * start of cleanup of activate cmd * ensure that apr is picked up * Update package.py * add apr explicitly as dependency * remove unnecessary newlines * Update package.py fixing dependencies
2018-03-30add version 3.6.5 to python (#7643)healther1-0/+1
2018-03-29ltrace: create new package (#7641)Matthias Diener1-0/+38
* ltrace: create new package * Update package.py * Update package.py
2018-03-29strace: create new package (#7640)Matthias Diener1-0/+39
2018-03-29Fix Python3 bug in tut (#7627)Adam J. Stewart2-0/+13
* Fix Python3 bug in tut * Revert URL change
2018-03-29gurobi: new package (#7639)Yifan Zhu1-0/+62
* gurobi: new pacakge * fixed flake8 errors
2018-03-29Add Julia 0.6.2 + checksum (#7577)Will Furnass1-1/+2
2018-03-29cmake: update package (#7633)Matthias Diener1-0/+1
2018-03-28libhio: add libhio package to spack (#7468)Howard Pritchard3-6/+118
spack brought out some configury/make issues with libhio, so some patches come along for the ride. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-03-28Update libcint versions (#7623)Michael F. Herbst1-1/+6
2018-03-28gmap-gsnap: new version with numerous bug fixes (#7625)Levi Baber1-0/+1
2018-03-28R-snowfall: new package (#7464)Levi Baber1-0/+40
* r-snowfall: dep for phantompeakqualtools * r-snowfall: fix version number * r-snowfall: fix hash
2018-03-28Fix download URL for SCons and add latest version (#7614)Adam J. Stewart1-5/+9
2018-03-28Add recent bohrium version (#7624)Michael F. Herbst1-1/+2
2018-03-28Adds liblockfile (and patch to avoid need for root) (#7621)Eric Müller2-0/+86
* --enable-shared *additionally* builds shared libraries (and it builds fast, so no variant here)
2018-03-28openmpi: updated package (#7574)Massimiliano Culpo1-0/+38
Modifications: * Added zlib dependency, starting from version 3.0.0 * Added memchecker support for debugging * Remove mpirun and similar links if slurm is selected as a scheduler
2018-03-27petsc: add 3.8.4 (#7616)Denis Davydov1-0/+1
2018-03-27added htslib 1.7 and checksum (#7617)David Orman1-0/+1
2018-03-27Add Catch v2.2.1 and v1.12.1 (#7615)Nils Deppe1-0/+2
Catch v1 and v2 are maintained independently since v2 requires C++11 support. Updating both to the latest.
2018-03-27[MUMPS] When building '+shared' put the 'inject_libs' after the objectVeselin Dobrev1-2/+10
files to get proper linking - this was needed on Ubuntu 14.04.
2018-03-27spades: fix build (#7608)Leonhard Reichenbach1-1/+1
Version 3.11 works with gcc7 see: https://github.com/ablab/spades/issues/26
2018-03-26New package r-tidyverse and r-tidyselect (#6507)Yifan Zhu7-7/+123
* r-rlang: added version 0.1.4 * r-lubridate: added version 1.7.1 and dependency * r-tidyselect: new package * r-dplyr: added version 0.7.4 * r-rstudioapi: added version 0.7 * r-tidyr: added version 0.7.2 and other dependencies * r-tidyverse: new package * r-tidyr: updated dependencies * r-tidyverse: added dependency r-rlang * r-tidyverse: edited docstring * r-tidyverse: fixed typo * fix typo again
2018-03-26Add missing X-libs dependencies to vim+x (#7599)Eric Müller1-0/+5
2018-03-26adios2: add support for Fortran bindings (#7600)Michael Kuhn1-1/+5
2018-03-26Remove pmi from the fabric list. (#7226)健美猫1-3/+9
2018-03-26zeromq: fix build (#7596)Michael Kuhn1-1/+1
pkg-config is also required for release versions.
2018-03-26openssl: Add variant to use system certificates (#6396)Michael Kuhn1-0/+35
2018-03-26mpich: added version 3.2.1 (#7598)Massimiliano Culpo1-0/+1
2018-03-25new package: Seqan (bioinformatics) (#7588)Sinan1-0/+52
* new package: Seqan (bioinformatics) * add compiler requirements as conflicts * fix typo * add dependency types * correct checksum
2018-03-25python: added a variant to enable PGO + using --with-icc if compiled with ↵Massimiliano Culpo1-3/+25
Intel (#7496) Added a variant to enable default optimizations for production builds. Uses --with-icc if built with Intel compilers.
2018-03-24Add a new packag: sofa-c. (#7470)健美猫1-0/+50
2018-03-24Update copyright on LLNL files for 2018. (#7592)Todd Gamblin2540-2540/+2540
2018-03-24Add a new package: graph500. (#7499)健美猫1-0/+50
* Add a new package: graph500. * Remove leading comments. * graph500 is a MakefilePackage. * Update. * Update.
2018-03-23Only add python flag for newer versions of glib (#7579)Adam J. Stewart1-3/+4
2018-03-23Adding bc and ed packages. (#7578)Jon Rood2-0/+79
* Adding bc package. * Adding ed package which is actually a dependency of bc.
2018-03-23beast1: new package (#7544)xfzhao1-0/+47
* beast1: new package * beast1: taking suggestion
2018-03-23add matplotlib version 2.2.2 (#7572)healther1-0/+1
2018-03-23intel performance libraries: add 2018.2 (#7569)Denis Davydov4-0/+8
2018-03-23Fix tclsh command for transitive dependencies (#7566)Federico Ficarelli1-1/+9
2018-03-22Dyninst links broken, everything switched to github (#6066)Alfredo Adolfo Gimenez1-12/+7
2018-03-22mc: create new package (#7564)Matthias Diener1-0/+56
* mc: new package * Update package.py * Update package.py * Update package.py
2018-03-22[hypre] add the 'headers' property (#7278)Veselin Dobrev1-3/+21
* [hypre] Add the 'headers' property plus a small tweak in the 'libs' property. * [hypre] Add fallbacks for searching for '.libs' in 'prefix.lib64' and in all of 'prefix'. * [hypre] Fix style. * [hypre] Use find_headers instead of find + HeaderList.
2018-03-22added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361)jthies1-0/+132
* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit) * packages/phist: fix some formatting errors (too long lines etc) and set allowed values for option "outlev" * packages/phist: fix some more flake8 errors * add headers property to netlib-lapack and intel-mkl * ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers()) * added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit) * packages/phist: fix some formatting errors (too long lines etc) and set allowed values for option "outlev" * packages/phist: fix some more flake8 errors * phist: use headers property to find lapacke include dir * phist: fix flake8 error * phist: be more specific about dependencies and update version * phist: state trilinos minimum version when building with Tpetra kernels * gmp: add oldish version 5.1.3 with checksum * phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex * phist: new version * phist: fix version checksum * Revert "add headers property to netlib-lapack and intel-mkl" This reverts commit d8cb62905ebfb2cba186fd2d736d54a88a49d089. * Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())" This reverts commit d406a77ed7879c124fbaf1d757d002b9f0771620. * phist: remove unused function * phist: reorder package file versions/variants/depends_on/rest * phist: some minor changes requested by @adamjsteward
2018-03-22perl-json: Create new package (#7431)Eric1-0/+34
2018-03-22Add py-cvxopt package (#7527)Adam J. Stewart1-0/+143
* Add py-cvxopt package * Flake8 fixes
2018-03-22Fix giflib unit tests on macOS/BSD (#7519)Adam J. Stewart2-0/+24
* Fix giflib unit tests on macOS/BSD * Unit tests occasionally fail when run in parallel
2018-03-22Add latest version of MPFR and patches for older versions (#7545)Adam J. Stewart3-178/+19
* Add latest version of MPFR and patches for older versions * Fetch and checksum patches instead of storing them * Fix bug, version attribute was being overridden
2018-03-22package/py-pyutilib: create new package (#7555)Sinan1-0/+51
2018-03-22llvm+python+lldb depends on py-six for versions 5 and up (#7056)Gregory Lee1-0/+3
2018-03-22Used names with __ in class level constructs to avoid rebinding (#7563)Massimiliano Culpo1-3/+3
fixes #3129
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