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2016-08-06opium: add new packageDenis Davydov1-0/+55
2016-08-05Merge pull request #1453 from hartzell/feature/add-package-for-seqtkbecker331-0/+43
Add package for seqtk
2016-08-05Merge pull request #1450 from hartzell/feature/add-package-for-bwabecker331-0/+52
Add package for bwa
2016-08-05Merge pull request #1442 from suraia/update-scorep-2.0becker333-21/+39
Update Score-P to 2.0 Most likely this can be generalized to link against older versions of dependencies, but it looks good for now.
2016-08-04Add Trilinos 12.6.4 (#1447)Bruno Turcksin1-0/+1
2016-08-04Add package for seqtkGeorge Hartzell1-0/+43
Seqtk is a tool for working with fast[aq] files.
2016-08-04Make flake8 happy (long lines)George Hartzell1-0/+52
2016-08-04flake8 fixesMichael Kuhn3-20/+27
2016-08-04Merge pull request #1437 from jgalarowicz/update-xercescbecker331-4/+5
Update the version of xerces-c, where the developers remove the old v…
2016-08-04Merge pull request #1438 from jgalarowicz/update-libmonitorbecker331-5/+3
Update libmonitor to use its new github location, it does not exist w…
2016-08-04Merge pull request #1443 from davydden/pkg/dealii_pythonbecker331-2/+15
dealii: add optional python bindings
2016-08-04Merge pull request #1431 from hartzell/feature/add-package-for-unisonbecker332-0/+94
Add package for unison (and ocaml)
2016-08-04dealii: add optional python bindingsDenis Davydov1-2/+15
2016-08-04Update Score-P to 2.0Michael Kuhn3-1/+12
2016-08-03Fix #1429: Remove git dep from gettext; break circular dependency.Todd Gamblin1-4/+0
- It's not really a circular dependency -- git is a run dependency of gettext - We can revert this change when Spack is smart enough to make git a run dependency and build it.
2016-08-03Fix flake8 errors for: Update libmonitor to use its new github location, it ↵Jim Galarowicz1-2/+1
does not exist where the package file now points to.
2016-08-03Fix flake8 errors for Update the version of xerces-c, where the developers ↵Jim Galarowicz1-2/+3
remove the old version, so there is no fallback.
2016-08-03Update libmonitor to use its new github location, it does not exist where ↵Jim Galarowicz1-3/+2
the package file now points to.
2016-08-03Update the version of xerces-c, where the developers remove the old version, ↵Jim Galarowicz1-2/+2
so there is no fallback.
2016-08-03Flake8 cleanupGeorge Hartzell1-0/+1
2016-08-03Merge pull request #1382 from KineticTheory/gktplus3-depsTodd Gamblin5-9/+64
GTK+3: Provide updates to package dependencies.
2016-08-03Add package for unisonGeorge Hartzell1-0/+50
Add package for unison (the file synchronizer). Needs the ocaml compiler to build.
2016-08-03Add package for ocaml compilerGeorge Hartzell1-0/+43
Installs the ocaml compiler.
2016-08-03Provide minor updates after code reviewKelly (KT) Thompson1-4/+2
+ Always depend on the gettext package. This simplifies the logic and I no longer need to 'import sys' + Only apply the patch for the older version of glib.
2016-08-03Merge pull request #1378 from LLNL/bugfix/gh-1324-intel-parallel-studiobecker331-1/+32
Bugfix/gh 1324 intel parallel studio
2016-08-03Merge pull request #1156 from adamjstewart/features/py-meepbecker3316-47/+685
Add py-meep package and dependencies Merging to add the gettext support, will submit a separate issue for the LD_LIBRARY_PATH issue with MPI and py-meep
2016-08-03Merge pull request #1420 from epfl-scitas/packages/plumedbecker331-0/+84
plumed : added package
2016-08-03qa : flake8 issuesalalazo1-5/+7
2016-08-02One more formatting change to make flake8 happy.Kelly (KT) Thompson1-1/+1
2016-08-02Merge pull request #1233 from hartzell/add-nextflowbecker331-0/+42
First cut package for nextflow, has issues
2016-08-02arpack-ng: fix blas/lapack librariesDenis Davydov1-9/+30
2016-08-02Merge pull request #1366 from hartzell/feature/add-package-for-ackbecker331-0/+51
Add package for ack
2016-08-02Merge pull request #1421 from hartzell/feature/add-package-for-texlivebecker331-0/+57
Add package for texlive
2016-08-02Merge pull request #1339 from hartzell/features/add-perlbecker331-0/+75
Add perl package
2016-08-02Remove accidentally committed cabal-install bitsGeorge Hartzell2-62/+0
2016-08-02Merge pull request #1243 from davydden/pkg/atlas_urlsbecker333-9/+120
atlas: fix urls and shared libs
2016-08-02Merge pull request #864 from davydden/kdiff3becker332-2/+46
kdiff3: initial version of the package
2016-08-02Merge pull request #1360 from glennpj/pysetuptoolsdepbecker334-3/+10
Add py-setuptools dependencies to packages
2016-08-02Merge pull request #1354 from ↵becker331-0/+3
paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant Bugfix/preferred variants do not recognise -variant
2016-08-02Remove local copy of cpanm installerGeorge Hartzell3-1075/+62
This is handled as a resource in the package now.
2016-08-02Add previous versions back into packageGeorge Hartzell3-0/+3
Following the advice of @glennpj, added the old versions back into the packages. I can install the current packages and the previous packages.
2016-08-02Remove useless `def unpack`George Hartzell1-3/+0
Before I learned that I was stumbling over a real but (#1308), I thought I needed to arrange for the fetcher to skip the unpack step. This commit removes the useful `def unpack`.
2016-08-02Flake8 cleanup.George Hartzell1-1/+2
2016-08-02Touch up variant commentGeorge Hartzell1-1/+1
2016-08-02Use "resource" machinery to manage cpanm tarballGeorge Hartzell1-8/+13
Use the resource machinery to fetch/cache/unpack/... the App::cpanminus tarball. - this hardcodes the version, I can't figure out how to use a variant to hold/set the value and access it in the resource(). - change up the install to use the `with working_dir()` meme.
2016-08-02Add the std spack header to perl/package.pyGeorge Hartzell1-0/+24
Stole the example header from antlr/package.py, included it at the top of perl/package.py.
2016-08-02Make running perl's tests conditionalGeorge Hartzell1-1/+2
Make running perl's tests conditional, one must now specify the `--run-tests` flag to the `spack install` command in order to run the tests. On one system (8 core, 16GB Digital Ocean Droplet), installing without tests takes 3 minutes, with tests takes 16 minutes.
2016-08-02Make the cpanm version a variantGeorge Hartzell1-2/+5
Rather than hard-coding the verison of `cpanm` that's [optionally] installed into the core, make it a variant with a default value of '1.7042'. Also discovered that `prefix + 'bin'` is the same as `prefix.bin`, so embetter that bit of code.
2016-08-02Add perl packageGeorge Hartzell2-0/+1117
Add perl package, based on [work by justintoo](https://github.com/LLNL/spack/pull/105). He had too many things pulled into that pull request, this just adds a perl package. Support the current releases on the past three minor branches. Run perl's tests before installing. Install cpanm into the core (makes building on top of this perl *much* simpler). Controlled by a variant.
2016-08-02Add package for texliveGeorge Hartzell1-0/+56
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