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2016-12-07Building lua-luafilesystem requires a newish-git (#2515)George Hartzell1-0/+1
See #2059 for background. I'm unable to install `lmod` because lua-luafilesystem fails. The luarocks install bits attempt to do a shallow clone of the luafilesystem sources and the default git on my CentOS 7 test box (`git version 1.8.3.1`) fails. This adds a build dependency that ensures that a relatively modern git is available.
2016-12-07Update texlive digest value (#2514)George Hartzell1-2/+9
* Update texlive digest value While the discussion in #2494 progresses, this changes fixes the digest values so that builds succeeed. * Add warning that texlive is not repeatably installable
2016-12-07netcdf: add checksum for 4.3.3.1 version (#2509)Andrey Prokopenko1-3/+4
2016-12-07cmake: added checksum for 3.1.0 version (#2508)Andrey Prokopenko1-1/+2
2016-12-06hypre, superlu-dist, trilinos - support using develop/master branches of ↵Barry Smith3-2/+24
these packages (#2443) Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-12-06Fixed a few minor issues with the 'fontconfig' package install script. (#2491)Joseph Ciurej1-4/+4
2016-12-05hdf5: added 'pic' variant (#2373)Andrey Prokopenko1-0/+7
2016-12-05Add Java support to OpenMPI (#2285)Adam J. Stewart1-55/+93
* Update OpenMPI to the AutotoolsPackage * Add Java support to OpenMPI * Fix missing commas * Be more specific about what versions support what flags * Revert description for thread_multiple variant
2016-12-05py-rtree: Added package (#1548)Elizabeth Fischer2-0/+95
* py-rtree: Added package * py-rtree = RTree (spatial indexing) data structure for Python * libspatialindex = Underlying C library wrapped by py-rtree * Flake8 and Copyright issues. * Fix Python syntax error. * Fixed dependency type error. * Added new version, based on updates requested in upstream PR * 1. Change cmake to build dependency. 2. Updated to CMakePackage
2016-12-05ghostcript-fonts: fix install on macOS (#2482)Denis Davydov1-1/+7
2016-12-05xextproto: fix on macOS by not running parallel build (#2483)Denis Davydov1-0/+2
2016-12-03Update go to 1.7.4 and 1.6.4 to fix security issues (#2467)George Hartzell1-5/+20
* Update go to 1.7.4 and 1.6.4 to fix security issues The go team recently rolled out two releases to address security issues. Details available on the [go release site](https://golang.org/doc/devel/release.html). This commit updates our explicitly supported versions. It also includes a comment about two CentOS requirements (enable user_namespace and ensure that the static c library is installed) that are required for the pacakges to pass their tests. * Flake8 cleanup
2016-12-03zlib: added 'pic' variant (#2470)Andrey Prokopenko1-0/+12
It looks more complicated because zlib has custom configure which does not support CFLAGS option. So instead, we take it from environment.
2016-12-03Update git package to include 2.11.0 (#2471)George Hartzell1-0/+1
2016-12-02Fix download URL and dependencies for py-pypar (#2430)hegner1-3/+7
* fix download URL and dependencies for py-pypar * use url_for_version in py-pypar
2016-12-02foam-extend: modification to accept flex version >= 2.6 (#2452)Nicolas Richart1-6/+23
* Modification to accept flex version >= 2.6 + bug fix on paraview dependency * flake8 "corrections"
2016-12-02doxygen: Disable unnecessary graphviz dependency by default. (#2323)Elizabeth Fischer1-1/+1
2016-12-02Updating SuperLU package to use pic_flag instead of -fPIC, and removing ↵Jon Rood1-9/+4
specific version for default install method. (#2456)
2016-12-02Updating yaml-cpp from Package to CMakePackage. (#2457)Jon Rood1-9/+11
2016-12-02new intel parallel studio versions (#2459)Gregory Lee1-6/+17
2016-12-01cmake: update the requirements for --no-system-jsoncpp option (#2312)Andrey Prokopenko1-1/+1
The option appeared in CMake 3.2 (specifically, in 3.2.0-rc2, see https://cmake.org/pipermail/cmake-developers/2015-February/024552.html).
2016-12-01Make X11 font install dir the font search default (#2203)George Hartzell1-2/+7
* Make X11 font install dir the font search default We install the X11 fonts into `/share/fonts` beneath the font-util installation prefix, but that directory is not one of the places that the font subsystem searches. This commit makes the fontconfig package depend on the font-util package, and then it makes ```python spec['font-util'].prefix + "/share/fonts" ``` be the fontconfig default font location. Before this change, plots drawn by R have bounding boxes where font glyphs should be. After this change fonts appear as expected. * Enrich description string (trigger new CI run) Improve the docstring for the package. Also interested in the side effect of triggering another CI run to see if the recent flake8 fix lets this PR run clean. * Flake8 cleanups
2016-12-01Fix py-scientificpython and py-argcomplete dependencies (#2420)hegner2-0/+3
* add missing py-numpy dependency to scipy * add missing setuptools build dependency to py-argcomplete
2016-12-01Updated hdf5: new versions added. (#2442)Sergey Kosukhin1-0/+11
* Updated hdf5: new versions added. * Updated hdf5: url_for_version() accounts for per-version urls.
2016-12-01Update trilinos version to 12.10.1 (#2454)Bruno Turcksin1-1/+2
2016-12-01likwid: add new package (#2455)Denis Davydov1-0/+61
2016-12-01Merge pull request #2364 from davydden/ips_mklGregory Lee1-1/+1
intel-parallel-studio: fix location of MKL libs
2016-11-30Update R&friends to use our X11 libs (#2053)George Hartzell3-0/+17
* Update R&friends to use our X11 libs Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X bits. * Conditionalize X stuff on variant Another step towards hooking up the X stuff. There's still discussion happening on the issue, but this is better than the 'everything must build with X' state that it was in.
2016-11-29New package - r-irkernel (#2434)Javier2-0/+102
* New package - r-irkernel * New package - r-pbdzmq, dependency of r-irkernel * Adding blank line expected by flake8 tests
2016-11-29Added the '+debug' and '+except' variants to the 'tetgen' package. (#2370)Joseph Ciurej2-5/+78
Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
2016-11-29New package - r-rbokeh (#2436)Javier1-0/+55
2016-11-29jemalloc: Update to 4.3.1 (#2435)Erik Schnetter1-0/+1
This corrects a severe problem (segfault) on macos Sierra.
2016-11-29add support for installing the development (master) version of PETSc (#2431)Barry Smith2-0/+47
Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours x
2016-11-28Fix building latest version of flex (#2401)Adam J. Stewart7-57/+96
* Fix building latest version of flex * Don't need when clause * Remove perl deps, shebang too long
2016-11-28add missing zeromq dependency to r-rzmq (#2425)hegner1-0/+2
2016-11-28New package - r-pryr (#2424)Javier1-0/+46
2016-11-28New package - r-uuid (#2423)Javier1-0/+43
2016-11-28New package - r-rmarkdown (#2422)Javier1-0/+50
2016-11-28New package - r-repr (#2421)Javier1-0/+43
2016-11-28hdf5: fix for lib64 installation (#2349)Denis Davydov1-1/+3
2016-11-26scotch: fix compilation on macOS (#2326)Denis Davydov1-9/+26
2016-11-26New package - r-rinside (#2416)Javier1-0/+57
* New package - r-rinside * Changes to pass flake8 test
2016-11-26New package - r-rsnns (#2415)Javier1-0/+50
2016-11-26New package - r-rzmq (#2414)Javier1-0/+42
* New package - r-rzmq * Adding homepage
2016-11-26New package - r-irdisplay (#2413)Javier1-0/+45
2016-11-26New package - r-hexbin (#2412)Javier1-0/+45
2016-11-24netcdf: multiple improvements (#2377)Andrey Prokopenko1-15/+43
- Added 'dap' and 'cdmremote' variants This is based on work in #2324 with the following motivation: Turn off DAP support by deafult. DAP requires curl, which has issues with circular dependencies. For 95% of NetCDF users that do not need DAP, turning it off avoides this rats nest of problems. - Added 'parallel-netcdf' variant To support work with parallel-netcdf - Added 'shared' and 'static' build separation
2016-11-24Bugfix/update go packages (#2369)George Hartzell4-8/+49
* Update go-bootstrap package The last C based Go src tree was the 1.4 series. For a while they were cutting new releases so that people could bootstrap from a C only system. Now they're recommending that you either use the release-1.4 branch or that you use a date-stamped tarball that they'll produce on an as-needed basis. There are several issues that keep 1.4.2 from building on a CentOS 7 system. I've switched to the date based tarball. The cgo bits were also mis-behaving, but they're not needed for the bootstrapping task so I've set an environment variable that disables them. Details [on the install-from-source page](https://golang.org/doc/install/source#go14) and these issues: - https://github.com/golang/go/issues/17545 - https://github.com/golang/go/issues/16352. * Update go package Switched from pulling from the git repository to using the source tarballs and added digest values. Added support for 1.7.3, continued supporting 1.6.2, including patches for a couple of problems (details in [17545](https://github.com/golang/go/issues/17545) and [17986](https://github.com/golang/go/issues/17986). Dropped support for 1.5.4 and 1.4.2 because they no longer pass their tests and the patches above to not apply.
2016-11-24Updated version - r-lattice (#2410)Javier1-2/+2
2016-11-24New package - r-testit (#2409)Javier1-0/+43
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