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* Add boost 1.67.0
* Remove boost 1.67.0 release candidate and the associated patch
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* Add r-bbmisc
* Add r-dicekriging
* Add r-lhs
* Add r-mco
* Add r-misc3d
* Add r-mlr
* Remove boilerplate from r-mlr package
* Add r-mlrMBO
* Add r-parallelmap
* Add r-paramhelpers
* Add r-plot3d
* Add r-rgenoud
* Add r-smoof
* Add r-rinside 0.2.14
* Fix flake8 issues
* Add specific required versions
* Add more up-to-date versions of r-{mco, mlr, mlrMBO, smoof}
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Added OpenMP variant for kokkos that can be disabled to build and test
on platforms where OpenMP is not available or desired. Also updated
version list
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* openmpi: libfabric support, ucx cleanup
* openmpi: remove unnecessary parentheses
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* libfabric: mxm deprecated, adding mlx aka ucx
* libfabric: adding dependencies that we have in spack
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* psm: new package
* psm: setting latest stable to preferred
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* rdma-core: new package
* rdma-core: change to platform conflict
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* libnl: new package
* libnl: change platform constraint to a conflict
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* Committer: sajid <sajid@xrmlite.phys.northwestern.edu>
modified: var/spack/repos/builtin/packages/py-numpy/package.py
* Corrected typo
* removing whitespace
* remove whitespace
* remove whitespace, if not will do this in vim
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* py-testinfra: Create new package
* py-testinfra: flake8 fixes
* py-testinfra: fix pytest version dependency
* py-testinfra: fix py-importlib version dependency
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* fabtests: new package
* fabtests: fix hashes for github archive behavior & add libfabric dep
* fabtests: both versions confirmed working
* fabtests: use developer provided archive
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* Add a new package: gloo.
* Remove dependencies.
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--enable-mpi-thread-multiple option not viable in Open MPI 3.0+
Signed-off-by: Dan Topa <dantopa@lanl.gov>
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* prinseq-lite: Create new package
* prinseq-lite: set variant description and add dependency type
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* Fix build issue with PMIx on aarch64
Work around a bug in PMIx that causes build issues on aarch64. Bug was
fixed in PMIx 2.1.1, so the spack package checks both the architecture
and the PMIx version. Workaround is to just not build the PMIx test and
example code.
* Minor code cleanups
Minor corrections to make 'spack flake8' happy.
* Add support for version 2.1.1
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- Ragel is a parser and finite state machine generator that can be
used as an alternative means for solving parsing problems without
Flex.
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* omega-h: new package
* omega-h: fix multiple package.py issues
* omega-h: use tarball checksum to avoid warning
* omega-h: wrap lines for flake8
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* new package: racon (bioinformatics)
* add cmake_arg method
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* HiC-Pro: a new package.
* Flake8.
* Update.
* Remove nektar.
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* r-matr: Create new package.
* shocklibs: Create new package.
* r-biom-utils: Create new package.
* r-mgraster: Create new package
* py-poster: Create new package.
* py-requests-toolbelt: Create new package.
* perl-libwww-perl: Create new package.
* py-mg-rast-tools: Create new package.
* mg-rast-tools: Fix version constraints for dependencies.
* Change dependency type of py-setuptools.
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* py-pymol: new package
* py-pymol: needs python+tk
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Change-Id: I31766d3ceb4fa8852b9bdc82444e36514e760f4b
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* DIAMOND: Add version 0.9.20
* DIAMOND: add version 0.9.21
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* openPMD-api
Add a new package for openPMD-api.
openPMD is a meta-data standard (markup, schema) for hierarchical,
scientific particle and mesh based data.
openPMD-api is a library wrapping the underlying backends (HDF5,
ADIOS, ...) into a single, object-aware API.
* Repository: https://github.com/openPMD/openPMD-api
* Project: https://github.com/openPMD http://www.openPMD.org
* mpi variant forwarding: fix concretization
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* libxml2: adding subdir to cpath for deps
* libxml2: no join_path
* libxml2: fix cpath for run_env
* libxml2: typo
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* freetype: adding subdir to cpath for deps
* freetype: no join_path
* freetype: fix cpath for run_env
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+ I am unable to build suite-sparse@5.2.0 with clang@6.0.0. The build fails
with the error:
```
2397 [ 99%] Linking C executable wildtype_demo
2398 make[4]: Leaving directory
`/tmp/kellyt/spack-stage/spack-stage-w0XYhK/SuiteSparse/GraphBLAS/build'
>> 2399 libgraphblas.so.2.0.1: undefined reference to `__fpclassify'
>> 2400 clang-6.0: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 2401 make[4]: *** [wildtype_demo] Error 1
```
+ This error appears because libgraphblas.so requires `-lm`, but that link
dependency is not explicitly listed in GraphBLAS\CMakeLists.txt.
+ A patch file is provided to add this dependency. The patch is only applied
when the compiler is `%clang`.
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* add variants and conflicts for curl
* darwinssl - Apple's SSL/TLS implementation
* libssh - use libssh implementation
* add darwin conflict for libssh{,2}
* add linux conflict for darwinssl
* remove openssl when +darwinssl
* Update package.py
* Update package.py
* Update package.py
* Update package.py
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build package files. (#7812)
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* xrandr: needs xrandrproto
* xrandr: fix typo
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* ADIOS 1.13.1
ADIOS 1.13.1 fixes several issues with zero-sized block
reading and writing when compression transports are used.
* SZ 1.4.12.3
Add the lastest SZ release used in ADIOS1.
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* bcl2fastq2: package update
* package/bcl2fastq2: homepage fix
* package/bcl2fastq2: glob fix
* package/bcl2fastq2: code clean up
* package/bcl2fastq2: code clean up #2
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