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2017-08-31New package: meson build system (#5250)William Scullin1-0/+43
* Adding a spec for the meson build system
2017-08-31kmergenie: new package (#5257)Audrey Thoma1-0/+43
2017-08-31jags: new package (#5256)Todd Gamblin1-0/+44
Just another Gibbs sampler
2017-08-31adding config args and virtual dependencieslas_thoma151-6/+6
2017-08-30mpich: fix MPI_Barrier segfault (#5235)Denis Davydov2-0/+18
* mpich: fix MPI_Barrier segfault * one more link
2017-08-30add optional maintainers property to package (#5230)Denis Davydov1-0/+2
* add optional package maintainers
2017-08-30hapcut2: new package (#5238)Audrey Thoma1-0/+44
2017-08-28lammps: install headers (#5226)Christoph Junghans1-2/+2
* lammps: install headers * use prefix.include.lammps
2017-08-28redundans: new package (#5217)Audrey Thoma3-0/+132
* redundans: new package * fixing url for fastaindex and adding dep for pyscaf
2017-08-25go: Update to 1.9 (#5216)Michael Kuhn1-0/+1
2017-08-25Zfp shared libs (#5212)Mark C. Miller1-7/+18
2017-08-24dealii: add nanoflann, sundials and adol-c plus fixes on macOS (#5175)Denis Davydov5-3/+76
* expat: fix build on macOS * nanoflann: add new package * sundials: fix compilation on macOS with clang+gfortran * adol-c: add 2.6.3 * dealii: add adol-c, nanoflann, sundials and 8.5.1 * sundials: minor cleanup
2017-08-24pkgconf: New package (#5202)Michael Kuhn1-0/+43
pkgconf is a new pkg-config implementation with additional features and no external dependencies. For a detailed comparison, see: http://pkgconf.org/features.html
2017-08-24ray: new package (#5200)Audrey Thoma1-0/+44
2017-08-24Make jpeg a virtual dependency. (#5190)Sergey Kosukhin8-11/+49
* Make jpeg a virtual dependency. * Make 'libjpeg-turbo' the default implementation of 'jpeg'.
2017-08-23Added options to libfabrics (#5191)sknigh1-0/+29
2017-08-23pgdspider: new package (#5186)Audrey Thoma2-0/+60
* pgdspider: new package * couple of fixes
2017-08-23Boost: develop (#5184)Axel Huebl1-0/+5
Adds a development version of boost, based on their github master repo. Git clones the submodules forever, but installs! :) Useful for testing since boost tends to break complex software dependencies quite often. This helps testing it before releases.
2017-08-22tcoffee: new package (#5185)Audrey Thoma4-0/+142
2017-08-22Boost: 1.65.0 (#5182)Axel Huebl1-0/+3
Adds the latest boost release. Downloads seem to be pointing to bintray from the official homepage.
2017-08-22Package 'libaec': no need to specify per version urls. (#5176)Sergey Kosukhin1-6/+6
2017-08-22Updates for package 'cdo'. (#5179)Sergey Kosukhin1-39/+39
* Package 'cdo': removed obsolete version 1.6.9. * Package 'cdo': updated urls. * Package 'cdo': added version 1.9.0. * Package 'cdo': no need to specify per version urls. * Package 'cdo': switched from Package to AutotoolsPackage. * Package 'cdo': added new variant 'openmp'. * Package 'cdo': variants 'curl' and 'magics' by default.
2017-08-21py-pyrad: new package (#5181)Audrey Thoma1-0/+41
2017-08-21Added custom messages for conflicts directive. fixes #4965 (#5083)Massimiliano Culpo1-2/+11
Users can now add an optional custom message to the conflicts directive. Layout on screen has been changed to improve readability and the long spec is shown in tree format. Two conflicts in `espresso` have been modified to showcase the feature.
2017-08-21Protobuf: 3.4 (#5177)Axel Huebl1-0/+1
2017-08-20Unbuffer so that output from packages appears when redirectingTodd Gamblin1-0/+45
- Python I/O would not properly interleave (or appear) with output from subcommands. - Add a flusing wrapper around sys.stdout and sys.stderr when redirecting, so that Python output is synchronous with that of subcommands.
2017-08-19Group Travis CI jobs in stages (#5104)Massimiliano Culpo1-0/+2
- This should speed-up Travis CI tests and refers to #5049 - Travis uses build-stages to group tests together - The idea is to let fast tests fail first, then move to longer ones. - Added external perl to avoid download failure from CPAN and reduce build time - Disabling perl-dbi: continues to fail with (504 Gateway Time-out) on Travis - We now cover all the build systems in tests: - Add back `openblas` to Travis as a separate package. - Switched `openblas` for `astyle` to build a simpler MakefilePackage. - Added 'tut' (WafPackage) - Added 'py-setuptools' (PythonPackage) - Added 'perl-dbi' (PerlPackage) - Added 'build_systems' directory to the ones for which we get a summary - Added 'openjpeg' (CMakePackage) - Added 'r-rcpp' (RPackage) - Added comments to build tests to show the covered build system
2017-08-19Add version 1.7.1 for cub. (#5164)健美猫1-0/+1
2017-08-19lbann: add depends_on hwloc (#5165)Adam Moody1-0/+1
2017-08-18cufflinks: new package (#5158)Audrey Thoma1-0/+46
2017-08-18muscle: fix (#5160)Audrey Thoma1-0/+5
2017-08-18For Tk, also provide a symlink for wishX.X. (#5161)Kelly (KT) Thompson1-0/+5
+ gitk (and possibly other tools) expect to find the Tk executable `wish`, so add a symlink with this name that points to the the versioned filename. + Example: `wish --> wish8.6`
2017-08-18build boost with graph library even when +mpihealther1-1/+0
Previously, when +graph and +mpi were enabled, the graph library was replaced with the graph_parallel library. This alters the logic for +graph+mpi to build both libraries.
2017-08-18corset: new package (#5157)Audrey Thoma1-0/+44
2017-08-18parsimonator: new package (#5143)Audrey Thoma1-0/+65
* parsimonator: new package * adding variant conflict
2017-08-18vegas2: new package (#5150)Audrey Thoma4-1/+126
* vegas2: new package * small version things
2017-08-18Add info for nextflow@v0.25.6 (#5148)George Hartzell1-0/+2
2017-08-18add man-db package and friends (#4844)Stephen McDowell5-0/+212
* add man-db package and friends * fix groff, libpipeline, and man-db dependencies * remove parallel groff altogether, build-only deps
2017-08-17Add a new package for gaussian (#5149)zenln1-0/+71
* Gaussian: Gaussian install * Adding Patch to spack installed files * Adding extra environment variables for gaussian at run time * Adding provides linda * Adding linda as a provided package * Shortning vars and fixing flake8 indentation and spacings
2017-08-17pagit: new package (#5140)Audrey Thoma1-0/+68
* pagit: new package * removed unneeded env var
2017-08-17new package libfabric (#5146)Audrey Thoma1-0/+35
* pbmpi: new package * forgot about libfabric
2017-08-17pbmpi: new package (#5144)Audrey Thoma1-0/+48
2017-08-17paml: new package (#5142)Audrey Thoma1-0/+52
2017-08-17microbiomeutil: new package (#5134)Audrey Thoma1-0/+53
* microbiomeutil: new package * got rid of unnecessary self * oops
2017-08-17Add new package for rhash, a cmake dependency (#5120)Adam J. Stewart2-40/+120
* Add new package for rhash, a cmake dependency * Add missing libuv dependency to cmake
2017-08-17py-faststructure: new package (#5131)Audrey Thoma1-0/+39
2017-08-17add libiconv dependency to libxslt (#5138)healther1-0/+1
this is a fix to an installation that failed due to configure for some reason not finding the libiconv shipped with glibc, but still trying to link against it see http://xmlsoft.org/FAQ.html
2017-08-16add missing dependencies to elfutils (#5135)sknigh1-2/+10
2017-08-16tppred: new package (#5091)Audrey Thoma2-1/+55
* tppred: new package * fixed url_for_version * fixed version spec on dependency * removing unneeded dependency
2017-08-16dialign-tx: new package (#5126)Audrey Thoma1-0/+50
* dialign-tx: new package * utilizing build_directory variable * forgot one
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