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2019-07-24Add conflicts statement to freetype for icc (#12111)Glenn Johnson1-0/+4
Freetype-2.8 and above use __builtin_shuffle which is not supported by icc.
2019-07-24Perl take in flags (#12112)t-karatsu1-0/+5
* perl: perl package takes in spack cflags. * fix for flake8 test.
2019-07-24nnvm: cmake bug is fixed. (#12113)Toyohisa Kameyama2-0/+21
2019-07-24rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117)Toyohisa Kameyama2-0/+17
2019-07-24QMCPACK Update July 2019 (#12097)Nichols A. Romero1-16/+9
* Add QMCPACK v. 3.8.0 * Remove QE variant conflict for serial QMCPACK installations. * Add support for QE 6.4.1 converter. * FindLibxml2QMC patch function only needed prior to QMCPACK 3.8.0
2019-07-24Do not build c-blosc test if intel in spec (#12110)Glenn Johnson1-0/+4
While the c-blosc library compiles with icc some of the c-blosc tests do not. Disable the tests so that the spack build can continue.
2019-07-24cmake: fix cxx98flag's name (#12114)t-karatsu1-1/+1
2019-07-23rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108)Toyohisa Kameyama1-0/+7
2019-07-23added relion 3.0.7 - removed deprecated versions (#12101)Douglas Duckworth1-7/+2
* relion - added v 3.0.7 and removed deprecated versions that have inferior performance * relion 3.0.7 does require cuda 9 or above
2019-07-23isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042)Toyohisa Kameyama2-0/+19
2019-07-23nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093)Toyohisa Kameyama1-0/+4
2019-07-23Quantum Espresso Update 2019 (#12098)Nichols A. Romero1-3/+3
* Add support for QE 6.4.1 * QE 6.3. backports branch no longer relevant. * List QE develop first.
2019-07-23Add EFA fabric to libfabricJimmie Lin1-1/+2
2019-07-23ioapi: add version 3.2 (#12088)Pariksheet Nanda1-0/+44
* ioapi: add version 3.2 * ioapi: unwrap version checksum; it's exempt from line length QA * ioapi: drop overridden build(); it's the same as the default
2019-07-23ncurses: remove TERMINFO from build env (#12086)Greg Becker1-0/+3
2019-07-23font-util: add missing autoconf automake dependencies (#12053)Marco Comparato1-0/+3
2019-07-22Add UCX 1.6.0 (#12089)Daniel Topa1-0/+1
https://github.com/openucx/ucx/releases/tag/v1.6.0 Released 2019-07-17 Verification builds on LANL Darwin x86_64 and Power9: dantopa@cn2037:pr-update-ucx.spack $ date Mon Jul 22 17:04:14 MDT 2019 dantopa@cn2037:pr-update-ucx.spack $ pwd /scratch/users/dantopa/repos/spack/pr-update-ucx.spack dantopa@cn2037:pr-update-ucx.spack $ spack find -ldf ucx ==> 2 installed packages -- linux-centos7-x86_64 / gcc@4.8.5 ----------------------------- w7fp4n6 ucx@1.6.0%gcc tt2hkol ^numactl@2.0.12%gcc srhy7ry ^rdma-core@20%gcc kvgvhpv ^libnl@3.3.0%gcc -- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------ cji3ce7 ucx@1.6.0%gcc pmgndwh ^numactl@2.0.12%gcc qymrwx6 ^rdma-core@20%gcc 2263pm5 ^libnl@3.3.0%gcc Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2019-07-22scons: add version 3.1.0 (#12084)Matthias Diener1-0/+1
2019-07-22cmake: Move cxx11 flags for fujitsu into the flag_handler method (#12056)Chuck Atkins1-5/+10
* cmake: Move cxx11 flags for fujitsu into the flag_handler method * cmake: sanitization and error checking in flag_handler * cmake: Fix fujitsu flag check from 'fc' to 'fj'
2019-07-22gcc: support without command line tools (#11040)Denis Davydov1-1/+7
2019-07-22openjdk (#10446)zschulte1-2/+18
* openjdk * Removing preferred from latest and adding a few lines for readability. * Remove bad whitesapce * removing formatting changes * stable url for openjdk 1.8 * remove extra blank line * actual binary
2019-07-22tealeaf: Don't add -march=native on ARM and gcc 5.x or before. (#12080)Toyohisa Kameyama1-0/+6
2019-07-22jdk: Add JDK 12.0.2_10 (#12081)Hironori-Yamaji1-0/+2
2019-07-21hpctoolkit: add version gpu and variant cuda (#12068)Mark W. Krentel1-6/+30
Add version for 'gpu' and variant for 'cuda'. These are currently available from the 'master-gpu' branch. * hpctoolkit: add version gpu and variant cuda * The gcc >= 4.8.x requirement only applies for dyninst >= 10.x.
2019-07-21libsharp: Don't add -march=native on ARM (#12064)Toyohisa Kameyama3-1/+32
* libsharp: Don't add -march=native on ARM * Add preferred=True to version 1.0.0.
2019-07-20hpcviewer: add version 2019.07 (#12067)Mark W. Krentel2-2/+8
ibm-java: fix the URL to only use a machine type that ibm-java supports so that 'spack info' doesn't report a non-existent URL on platforms that it doesn't support.
2019-07-19Package inheritance: Find patch files defined in parent classes using MRO ↵Greg Becker1-0/+11
(#12051) Fixes #8908, 11844 Use Python MRO to find patch files from parent classes.
2019-07-19font-util package: add autoconf/automake build deps (#12071)Peter Scheibel1-0/+3
Fixes #12026 These are required on some systems
2019-07-19leveldb: add 1.22 (#12044)Michael Kuhn1-9/+56
2019-07-19libxpm: cope with system gettext if configured. (#10881)Chris Green1-2/+6
* If gettext is installed in the system it won't be in the spec tree.
2019-07-18stacks: update view management for multiple/combinatorial viewsGregory Becker2-2/+2
This adds notion of a default view, other views in environments
2019-07-18cmake: add version 3.15.0 (#12058)Matthias Diener1-0/+1
2019-07-18Add master version to sklearn (#12057)Adam J. Stewart1-3/+16
2019-07-18pkg PRRTE: added version 1.0.0 (#12054)Matthieu Dorier1-1/+2
2019-07-18added version 3.1.3 of PMIx (#12055)Matthieu Dorier1-1/+2
2019-07-18Workaround for #9149 (#12050)Adam J. Stewart1-9/+12
2019-07-18py-mlxtend: new package at 0.16.0 (#12039)Justin S1-0/+23
* py-mlxtend: new package at 0.16.0 * py-mlxtend: fix dependencies
2019-07-17update web site and git url for BMI package (#12036)Phil Carns1-2/+2
2019-07-17add charliecloud v0.10 (#12046)Jordan Ogas1-0/+1
2019-07-17Fix scikit-learn build with Apple clang (#11496)Adam J. Stewart4-14/+111
* Fix scikit-learn build with Apple clang * Update compiler unit tests * Fix unit tests * Fix OpenMP dep * recursive=True no longer necessary * Add myself as a maintainer * Specify which versions require OpenMP * Typo fixes * LLVM-OpenMP is the correct dependency, no OMPT * Flake8 fix * Undo Apple Clang OpenMP flag change, split into a separate PR
2019-07-17libjpeg-turbo: set compiler flags with CMake args (#11938)t-karatsu1-0/+18
Later versions of libjpeg-turbo build with CMake; to build with user-specified cflags, the user must supply these to CMake as -DCMAKE_C_FLAGS (Spack's typical approach of injecting these flags into the compiler wrapper invocation is insufficient in this case). Currently libjpeg-turbo cannot be implemented as a CMakePackage (and thereby take advantage of the flag_handler implementation it provides) because not all versions of libjpeg-turbo use CMake, so this adds a custom implementation of flag_handler and flags_to_build_system_args to libjpeg-turbo.
2019-07-17Add support for .txz and .tbz2 file extensions (#12048)Adam J. Stewart2-8/+4
2019-07-17kim-api 2.1.0 (#12041)Ryan S. Elliott1-1/+2
2019-07-17package opencoarrays: add new version: 2.7.1 (#12043)brietzke1-0/+1
2019-07-17Cmake/add option for fujitsu compiler (#11839)t-karatsu1-0/+6
* cmake: change c++ spec when building with Fujitsu compiler. * cmake: define cxxflags using a Fujitsu compiler's method. * cmake: Add condition of whether to add cxx11 option.
2019-07-16Added url_for_version to python/package.py (#12040)Shane R. Spencer1-0/+4
2019-07-16py-pandas: add 0.24.2 (#12038)Justin S1-0/+1
2019-07-16r: set FPICFLAGS for compilers except 'gcc' (#12033)Hironori-Yamaji1-0/+4
2019-07-16package mutationpp: add new version: 1.0.0 (#12035)brietzke1-0/+1
2019-07-15qt: fix patch checksum (#12024)Michael Kuhn1-1/+1
It seems that GitHub's output changed slightly for this patch (one more letter for both short hashes on the index line), probably due to the number of objects in the repository.
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