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2019-10-20Add latest version of py-markupsafe (#13309)Adam J. Stewart1-7/+9
2019-10-20Add latest version of py-lxml (#13310)Adam J. Stewart1-3/+4
2019-10-20Add latest version of py-jinja2 (#13311)Adam J. Stewart1-10/+11
2019-10-20Add latest version of py-itsdangerous (#13312)Adam J. Stewart1-2/+4
2019-10-20Add latest version of py-idna (#13313)Adam J. Stewart1-2/+3
2019-10-20Add latest version of py-hypothesis (#13314)Adam J. Stewart1-4/+6
2019-10-20Add latest version of py-httpbin (#13315)Adam J. Stewart1-7/+11
2019-10-20Add latest version of py-flask (#13316)Adam J. Stewart1-7/+9
2019-10-20Add latest version of py-torchvision (#13289)Adam J. Stewart1-1/+4
2019-10-20Add latest version of py-typing-extensions (#13288)Adam J. Stewart1-2/+4
2019-10-20Add latest version of py-urllib3 (#13286)Adam J. Stewart1-3/+8
2019-10-20Add latest version of py-virtualenv (#13285)Adam J. Stewart1-3/+4
2019-10-20Add latest version of py-werkzeug (#13284)Adam J. Stewart1-1/+6
2019-10-20Add py-mypy-extensions package (#13283)Adam J. Stewart1-0/+19
2019-10-20Add py-mypy package (#13282)Adam J. Stewart1-0/+26
2019-10-20Add py-pytest-forked package (#13281)Adam J. Stewart1-0/+20
2019-10-20Add py-raven package (#13280)Adam J. Stewart1-0/+21
2019-10-20Add py-flake8-import-order package (#13273)Adam J. Stewart1-0/+20
2019-10-20Add py-sphinxcontrib-devhelp package (#13278)Adam J. Stewart1-0/+23
2019-10-20Add py-sphinxcontrib-applehelp package (#13279)Adam J. Stewart1-0/+23
2019-10-20Add py-sphinxcontrib-htmlhelp package (#13277)Adam J. Stewart1-0/+23
2019-10-20Add py-sphinxcontrib-jsmath package (#13276)Adam J. Stewart1-0/+22
2019-10-20Add py-sphinxcontrib-qthelp package (#13275)Adam J. Stewart1-0/+23
2019-10-20Add py-sphinxcontrib-serializinghtml package (#13274)Adam J. Stewart1-0/+23
2019-10-20Add py-typed-ast package (#13272)Adam J. Stewart1-0/+18
2019-10-20Add py-docutils-stubs package (#13271)Adam J. Stewart1-0/+19
2019-10-20Add py-brotlipy package (#13270)Adam J. Stewart1-0/+23
2019-10-19GCC: fix build on macOS Catalina (#13202)Adam J. Stewart1-15/+19
* GCC: speed up build * Add back 3-stage bootstrapping
2019-10-19brotli: fix darwin install name (#13258)Adam J. Stewart1-0/+6
2019-10-18ADIOS2: Dataspaces, libffi, libfabric (#13230)Axel Huebl2-0/+26
* DataSpaces: 1.8.0 Add a newer release of DataSpaces for ADIOS2. Also add missing `-fPIC` flags since this is a static library. * ADIOS2: Dataspaces, libffi, libfabric Add missing dependencies to ADIOS2. Without explicit control, those dependencies might get picked up from the system environment and will cause unstable builds. * Hide transitive SST dependencies * ADIOS2: Simplify SST CMake Flags As proposed by Chuck
2019-10-18Updated to latest version. Removed dependency on node-js (#13055)wspear1-17/+21
* Updated to latest version. Removed dependency on node-js * Refined dependencies * Added dependencies, including version-specific ones. Re-added 0.9.4. * Updated py-jupyterhub requirements. Enabled version 0.9.4 and 1.0.0
2019-10-18fftw: altivec only works for float (#13242)Christoph Junghans1-6/+17
2019-10-18Added package py-python-oauth2, a dependency of py-jupyterhub@0.9.4. … ↵wspear1-0/+18
(#13140) * Added package py-python-oauth2, a dependency of py-jupyterhub@0.9.4. Depends on #13132, #13133 and #13134 * Remove optional dependencies
2019-10-17interproscan: add 5.38-76.0 (#13253)Justin S1-3/+5
2019-10-17Separate setting build environment and run environment in packages (#11115)Massimiliano Culpo6-53/+56
* Methods setting the environment now do it separately for build and run Before this commit the `*_environment` methods were setting modifications to both the build-time and run-time environment simultaneously. This might cause issues as the two environments inherently rely on different preconditions: 1. The build-time environment is set before building a package, thus the package prefix doesn't exist and can't be inspected 2. The run-time environment instead is set assuming the target package has been already installed Here we split each of these functions into two: one setting the build-time environment, one the run-time. We also adopt a fallback strategy that inspects for old methods and executes them as before, but prints a deprecation warning to tty. This permits to port packages to use the new methods in a distributed way, rather than having to modify all the packages at once. * Added a test that fails if any package uses the old API Marked the test xfail for now as we have a lot of packages in that state. * Added a test to check that a package modified by a PR is up to date This test can be used any time we deprecate a method call to ensure that during the first modification of the package we update also the deprecated calls. * Updated documentation
2019-10-17python-editor: added new package at v1.0.4 (#13126)wspear1-0/+19
2019-10-16eospac: avoid conflict with linux's getopt (#13241)Christoph Junghans1-0/+5
* eospac: avoid conflict with linux's getopt * Update package.py
2019-10-16add python version 3.8.0 (#13218)Jeffrey Salmond1-1/+2
2019-10-16expat: don't pick up external docbook (#13228)Christoph Junghans1-2/+2
2019-10-15add latest version of vim (#13203)Jeffrey Salmond1-0/+1
2019-10-15hypre: add version 2.18.1 (#13224)Satish Balay1-0/+1
2019-10-15ADIOS2: Default no Python (#13220)Axel Huebl1-1/+1
Turn off the python variant by default.
2019-10-15arborx: update v0.8-beta to v0.8-beta2 (#13143)Andrey Prokopenko1-8/+9
- Require Kokkos with c++14 - Update the case of CMake options
2019-10-15kokkos: add cxxstd variant (#13142)Andrey Prokopenko1-1/+10
2019-10-14Add version 0.177 of elfutils (#13129)Tim Haines1-1/+2
* Add version 0.177 * Fix spacing
2019-10-14ntpoly: Define module directry when compiling with Fujitsu compiler. (#13120)t-karatsu1-0/+3
* ntpoly: Define module directry when compiling with Fujitsu compiler. * Delete quotes.
2019-10-14filter_file uses "surrogateescape" error handling (#12765)Massimiliano Culpo1-1/+2
From Python docs: -- 'surrogateescape' will represent any incorrect bytes as code points in the Unicode Private Use Area ranging from U+DC80 to U+DCFF. These private code points will then be turned back into the same bytes when the surrogateescape error handler is used when writing data. This is useful for processing files in an unknown encoding. -- This will allow us to process files with unknown encodings. To accommodate the case of self-extracting bash scripts, filter_file can now stop filtering text input if a certain marker is found. The marker must be passed at call time via the "stop_at" function argument. At that point the file will be reopened in binary mode and copied verbatim. * use "surrogateescape" error handling to ignore unknown chars * permit to stop filtering if a marker is found * add unit tests for non-ASCII and mixed text/binary files
2019-10-14bugfix: install --only dependencies works in env (#13090)Greg Becker1-1/+3
* bugfix: install --only dependents works in env includes regression testing
2019-10-14py-petsc4py: add version 3.12.0 (#13209)Satish Balay1-1/+3
* py-petsc4py: add version 3.12.0 * fix typo wrt maintainer
2019-10-14Complete cleanup of the adios2 package configuration (#13107)William F Godoy1-53/+49
Provide up to date specs for build options Remove non-production versions Format using autopep8 and flake8 Separate cmake options in adios2 2.4.0 version Keep default as True as much as possible Support for Python 2 and 3 for adios2 versions <= 2.4.0 Starting v2.5.0 only Python 3 is supported Addressing review suggestions