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2019-12-07Add new py-testtools package (#14033)Adam J. Stewart1-0/+17
2019-12-07Add new py-python-subunit package (#14028)Adam J. Stewart1-0/+19
2019-12-07Add New package feh and supporting packages (#14013)Quinn8-0/+240
* Adding libid3tag package for supporting feh * Adding libexif package for supporting feh * Adding imlib2 package for supporting feh * Adding the feh package * Rewording the cleanup function for libid3tag * Fixing some flake8 issues for imlib2 and libid3tag * Adding sources for the patches and swapping rm for os.remove * Flake8 fixes * swapping md5sums for sha256sums
2019-12-07Add new py-hacking package (#14027)Adam J. Stewart1-0/+19
2019-12-07Add new py-fixtures package (#14026)Adam J. Stewart1-0/+17
2019-12-07Add new py-extras package (#14025)Adam J. Stewart1-0/+18
2019-12-07Add py-tox package (#14024)Adam J. Stewart1-0/+26
2019-12-07Add latest version of py-importlib-metadata (#14023)Adam J. Stewart1-8/+10
2019-12-07flann: fix missing dependencies (#14022)Adam J. Stewart1-2/+2
2019-12-07votca*: add v1.6_rc1 (#14017)Christoph Junghans6-10/+79
* votca*: add v1.6_rc1 * votca: prefer v1.5.1
2019-12-07openPMD-api: 0.10.1 (#14018)Axel Huebl1-0/+1
Add the latest release of openPMD-api.
2019-12-06Spec Header Dirs: Only first include/ (#13991)Axel Huebl1-2/+1
* CUDA HeaderList: Unit Test * Spec Header Dirs: Only first include/ Avoid matching recurringly nested include paths that usually refer to internally shipped libraries in packages. Example in CUDA Toolkit, shipping a libc++ fork internally with libcu++ since 10.2.89: `<prefix>/include/cuda/some/more/details/include/` or `<prefix>/include/cuda/std/detail/libcxx/include` regex: non-greedy first match of include Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com> * CUDA: Re-Enable 10.2.89 as Default
2019-12-06ibm-java: add version 8.0.6.0 (#14003)Mark W. Krentel1-9/+16
* ibm-java: add version 8.0.6.0 Add version 8.0.6.0 and remove 8.0.5.30. IBM is fairly aggressive about removing old versions, and 8.0.5.30 is no longer available from their download site. * Restore version 8.0.5.30, although it is no longer available for download from IBM.
2019-12-06Packages/py-maestrowf (#14010)Francesco Di Natale1-1/+13
* Addition of repository branches to maestrowf. * Addition of 1.1.5dev pre-release. * Correction of a merge conflict. * Addition of Maestro release 1.1.5 * Addition of Maestro release 1.1.6 (removal of 1.1.5) * Sets 1.1.6 to the preferred version. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Tweak to the url to point to latest.
2019-12-06Add py-parameterized package (#14016)Adam J. Stewart1-0/+17
2019-12-06Update py-theano dependencies (#14015)Adam J. Stewart1-3/+4
2019-12-06mesquite: fix build of the no mpi variant. (#14012)nicolas le goff1-3/+8
* mesquite: fix build of the no mpi variant. * mesquite: added the --without-mpi option to configure.
2019-12-06[Package: HPX] Fix Apex and OTF2 support (#13982)Teodor Nikolov2-1/+89
* Fix Apex and OTF2 support - Comment out apex as a dependncy: it is bundled with HPX. - Apply a patch to v1.3.0 to correctly build with APEX. - Add otf2 as a dependency when APEX is enabled. * Remove depends_on('apex')
2019-12-06augustus: Set compile commands for each compiler and Fix for using 'boost' ↵t-karatsu1-0/+25
on Spack (#13975) * augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack * fix for flake8 * delete 'string' args * Fix args of filter_file func * Fix args of other filter_file func
2019-12-06Add patch to fix issue building current llvm develop master on power9 (#13986)Galen Shipman2-0/+19
* Add patch to fix issue building current llvm develop master on power9 * Conform to proper block commenting Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-06Fastmath: Added required version (#13990)Tamara Dahlgren1-1/+3
* Fastmath: Added required version * Changed the version to 'latest' (per balay).
2019-12-06Ceed: Added required version (#14006)Tamara Dahlgren1-0/+2
2019-12-06sz: Change optimization flags for Fujitsu compiler (#14007)t-karatsu2-0/+15
2019-12-06Specify self for internal setup method (#14008)Paul1-4/+4
2019-12-06Convert llvm Spackage to use the monorepo (#11392)Brian Homerding5-534/+135
* [WIP] Convert llvm spackage to use the monorepo * Correcting python dependencies * Adding develop version for llvm monorepo * Python 2.6 Fix * Build Flang fork in a different root_cmakelists_dir * Formatting Fix * Including flang package changes * Removing explicit llvm dependencies variants * flake8 fix * Updating patches and llvm+flang logic * Updating env setup API * Add top level git * Conflicting flang variant with other variants
2019-12-06Add h5sh python package (#14001)Seth R. Johnson1-0/+25
* Add h5sh package * Fix requirements and update version
2019-12-05hpcviewer: add version 2019.09 (#14004)Mark W. Krentel1-7/+10
Add version 2019.09. Adjust the iteration through versions to eliminate the need for version_list.
2019-12-05Add new TensorFlow package (#13112)Dominik Dold19-43/+978
* add tensorflow Change-Id: Id778c68d148cc42f0b478a9d10a8f937cb54cdc6 * make bazel and tensorflow build Change-Id: Iae9005e8f4dcc8f1ed36ea9337d2430aeebb291f * fix flake8 Change-Id: Ib05529dd796eab4a8855a5d7775cc4efea8e479d * 2nd flake8 attempt Change-Id: I46224be3a374b2a65793048b0c5178ea64adbd78 * replace md5 sums with sha256 * add version 1.13.2 * bazel() -> bazel('build',... * specify versions of bazel dependency * build with CUDA * add TODOs * add more todo"s * improve enum34 dependency * py-future is a dependency as of v1.14 * Update var/spack/repos/builtin/packages/tensorflow/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/tensorflow/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/tensorflow/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/tensorflow/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * enable nccl, cuda by default * explain patches * add todo * remove unnecessary copt_flag * use join * join argument must be an iterable * split long line; use same opts for non-cuda build * without opt flags, configure hangs * introduce build phases; re-arrange * undo mistake * restore unset tmp_path * as of v1.14, nccl_install_path is parsed correctly, hence change ...prefix.lib to ...prefix * now, version 1.14 compiles successfully with cuda * add version 2.1.0 * specify bazel dependency for version 2.1.0-rc0 * account for deprecated bazel opts for v2.1.0-rc0 * disable mkldnn contraction kernel * Flake8 fixes * md5 -> sha256 * Fix TF and TF-estimator version deps * Don't just comment out patch * Add myself as a maintainer * Patch py-astor to support newer py-setuptools * Add more versions and bazel version constraints * Add a build phase * Add note about configure interactivity * dev-build -> build-env * Disable iOS build * Use correct optimization flags * Add variants for all possible features * nccl isn't always a dependency * Specify correct dependency versions for each release * Libs may not be in lib or lib64 * Add py-opt-einsum package * Add newer version of py-protobuf * Add newer version of py-wrapt * Fix Python 2.6 syntax error * Code review * Set more env vars for older versions * Add more env vars, fix bazel versions, add conflicts * Fix config options * Specify version that support --config args * Add py-future dependency for Python 2 * Fix cuda config flag and compute capabilities * Fix installation on macOS, add unit tests * Override cuda variant default to True on non-macOS * Rename tensorflow to py-tensorflow * Has to extend something * Fix os.symlink call * convert cuda_arc values to capabilities * restore nccl prefix path for v1.13.1 * Revert to v2 * Remove extraneous period * Add new version of jdk/openjdk * More stable cuda_arch formatting * Fix bazel unit tests * Fix symlinking * Fix unit tests * +gcp by default until build error figured out
2019-12-05paraview: Adjust python version constraints (#13999)Chuck Atkins1-2/+2
py-matplotlib: No constraint necessary for py3 but py2 has an upper bound py-numpy: No constraint necessary for py3 but py2 has an upper bound
2019-12-05Added go 1.13.5 and 1.12.14 (#13997)Paul1-0/+2
2019-12-05py-pillow: allow older versions to build with python 3.4 (#14000)Chuck Atkins1-1/+2
2019-12-05eospac: fix url (#13998)Christoph Junghans1-8/+8
2019-12-05New package: swipl (#13978)Alexander Knieps1-0/+71
* New package: swipl * Removed boilerplate, added maintainer * Fixed python 2 incompatibility * Update var/spack/repos/builtin/packages/swipl/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * swipl: Added conflict with intel compiler
2019-12-04patching: do strict version range checking (#13989)Peter Scheibel2-0/+4
* apply strict constraint checks for patches, otherwise Spack may incorrectly treat a version range constraint as satisfied when mixing x.y and x.y.z versions * add mixed version checks to version comparison tests
2019-12-05Add py-matplotlib 3.1.2 (#13994)Adam J. Stewart1-1/+2
2019-12-04CUDA: Keep 10.1.243 As Preferred (#13983)Axel Huebl1-1/+2
Keep CUDA 10.1.243 as the preferred version until the issue of including implementation details of libcu++ is addressed.
2019-12-04Update libensemble to v0.6.0 (#13987)Stephen Hudson1-1/+2
2019-12-04Add latest version of py-scikit-learn (#13979)Adam J. Stewart1-1/+2
2019-12-04Add Elfutils 0.178 (#13976)Tim Haines1-1/+7
* Add elfutils-0.178 * Disable debuginfod server * Fix flake8
2019-12-04Use correct range check for the version (#13977)Tim Haines1-1/+1
Update to #13893
2019-12-03Release a new version v2.1.8.0 for SZ (#13974)Sheng Di1-1/+4
* Release a new version v2.1.8.0 for SZ * add maintainer * add parallel = False to avoid potential compile issue
2019-12-03mpich: update build requirements (#13966)Rob Latham1-0/+6
To build from git, MPICH will need newer autoconf, automake, and libtool than typically available on many systems.
2019-12-03argobots: consistently use 'master' (#13965)Rob Latham1-4/+4
Commit 71cd91e4 changed "latest from git" to 'master' from former 'develop'. Build dependencies still pointed to @develop, though
2019-12-03new package: Simmetrix SimModSuite (#8730)Cameron Smith1-0/+242
* package for Simmetrix SimModSuite * simmodsuite: passes flake8 * simmetrix: add version, set cmake prefix path A given install will either use the libs built on rhel7 or rhel6. For now, I'm sticking with the non-spack install convention of placing the libraries into sub-directories named according to their build process (os + compiler). * simmetrix: add older version * simmetrix: set build env paths easier to build pumi using CMAKE_PREFIX_PATH * simmetrix: address review comments * simmetrix: add new version and remove old one * simmetrix: flake8 fixes * simmodsuite: oslib var is in self * simmodsuite: update version and checksum * simodsuite: set LD_LIBRARY_PATH for cad kernels * update license * update setup_environment calls * increase indentation for flake8 * python3.8 flake8 fixes * use spack consistent naming Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * sha256 required, update versions and hashes
2019-12-03kaldi: Change process of version analysis when using Fujitsu compiler. (#13960)t-karatsu2-0/+14
2019-12-03fix_cantera_installation (#13962)asmaahassan901-2/+2
For a successful cantera installation, googletest has to be installed with gmock on, and sundials has to be of version less than 3.2
2019-12-03bump libfabric to 1.9.0 (#13964)Phil Carns1-0/+6
2019-12-03Update MrBayes to 3.2.7a and correct MPI variants (#13929)Yuanqi Wang1-13/+10
* Update MrBayes and correct MPI variant * Use tarballs and remove autotools dependencies * MrBayes: remove ISA variants
2019-12-03Update package libgpg error (#13697)Jannek Squar3-0/+201
* Added build dependency on gawk * Use virtual depdendency * Added patch to prepare libgpg-error for use with gawk@5 * Added reasoning with link for need for patch
2019-12-02Add missing metis include to superlu-dist (#13956)Chris White1-1/+3
* Add missing metis include to superlu-dist * Fix PEP-8 line length * Fix PEP-8 indent
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