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2019-12-20build bazel with jdk (#14258)Sajid Ali1-1/+4
* build bazel with jdk * Flake 8 * Fix typo
2019-12-20npm: add Python 3 support (#14255)Adam J. Stewart1-2/+33
2019-12-20Fetching from URLs falls back to mirrors if they exist (#13881)Massimiliano Culpo57-133/+123
Users can now list mirrors of the main url in packages. - [x] Instead of just a single `url` attribute, users can provide a list (`urls`) in the package, and these will be tried by in order by the fetch strategy. - [x] To handle one of the most common mirror cases, define a `GNUMirrorPackage` mixin to handle all the standard GNU mirrors. GNU packages can set `gnu_mirror_path` to define the path within a mirror, and the mixin handles setting up all the requisite GNU mirror URLs. - [x] update all GNU packages in `builtin` to use the `GNUMirrorPackage` mixin.
2019-12-20PGMATH library symbols patch (#14254)Nichols A. Romero2-0/+97
* Add symbols patch * Apply symbols patch to pgmath * Add github issue number for symbols patch. * Add naromero77 as a maintainer. * Patch only applied to March 2019 release and master.
2019-12-20Add py-pyinstrument package (#14241)Adam J. Stewart1-0/+21
2019-12-20node-js: add Python 3 support (#14242)Adam J. Stewart1-28/+52
* node-js: add Python 3 support * Update node-js, fix Python 3 support in v12
2019-12-20Latest versions of CMake need a hand for Python detection (#14247)Hadrien G1-0/+1
2019-12-20root: Record that old versions of ROOT don't support modern GCC (#14250)Hadrien G1-0/+3
* Record that old versions of ROOT don't support modern GCC * Well, actually I don't know about 6.07 * Fix typo and follow odd version recommendation from @chissg
2019-12-20QE Update Dec 2019 (#14238)Nichols A. Romero1-9/+23
* Add QE 6.5 * Support for serial HDF5 case with serial (no mpi) QE is now supported but requires a patch for 6.4.1 and 6.5. * Add naromero77 as a maintainer.
2019-12-20Do not apply the unuran patch to ROOT 6.06/xy, it is not compatible (#14245)Hadrien G1-1/+1
2019-12-20Add py-pyinstrument-cext package (#14240)Adam J. Stewart1-0/+18
2019-12-20Adding myself as a ROOT maintainer (#14251)Hadrien G1-1/+1
2019-12-20Added hwloc dependency to gromacs (#14244)Andras Wacha1-0/+7
2019-12-20R: added v3.6.2 (#14248)Patrick Schratz1-0/+1
2019-12-20ACTS: added v0.13.0 and v0.12.1 (#14246)Hadrien G1-0/+2
2019-12-19New package: cinema_lib (#14231)Ethan Stam1-0/+41
* Start cinema package * Remove boilerplate and add description * Formatting for pep8 * Correct milestone tag * 'master' instead of 'develop' Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Two variants, both with numpy and other small changes * When +image for scikit Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-19root: Add chissg as maintainer. (#14235)Chris Green1-0/+2
2019-12-19Add py-scipy 1.4.1 (#14230)Adam J. Stewart1-2/+4
2019-12-19dmd: setup dependent build environment (#14198)Adam J. Stewart1-0/+3
* dmd: setup dependent build environment * Fix call signature of setup_dependent_build_environment
2019-12-19Remove python2-ism in root package (#14223)Hadrien G1-2/+1
2019-12-18possible_dependencies() now reports missing dependenciesTodd Gamblin1-0/+21
- Add an optional argument so that `possible_dependencies()` will report missing dependencies. - Add a test to ensure it works. - Ignore missing dependencies in `possible_dependencies()` by default.
2019-12-18aspell: Rename 'darwin.patch' and apply it to all targets. (#14206)t-karatsu2-1/+1
2019-12-18NETCDF-C: Add latest release 4.7.3 (#14214)Greg Sjaardema1-0/+1
Added checksum for latest NetCDF release 4.7.3
2019-12-18Add dependencies for hpcrypt (#8067)Greg Becker7-0/+138
* Add dependencies for hpcrypt * address review comments * flake * license-fix * fix checksums * Update py-hvace homepage Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * update py-hvac url Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-18amrex: Define module directry when compiling with Fujitsu compiler. (#14124)t-karatsu1-0/+3
2019-12-18Fix pkgconfig dependencies (#14175)Michael Kuhn3-3/+3
pkgconfig is the virtual provider, pkg-config is an implementation.
2019-12-18PNETCDF: Update to include latest release 1.12.1 (#14213)Greg Sjaardema1-0/+1
Added checksum for recent 1.12.1 release.
2019-12-18SEACAS: Update to include new versions (#14212)Greg Sjaardema1-0/+2
Added checksum and tag name for last two SEACAS releases.
2019-12-18wireshark: remove non-existing dependencies (#14209)Adam J. Stewart1-34/+17
2019-12-18py-scikit-optimize: fix test dependency (#14210)Adam J. Stewart1-3/+2
2019-12-18New package: py-zc-lockfile (#13586)Marc Mengel1-0/+17
* package py-zc-lockfile * package py-zc-lockfile * autopep8, docutils cleanup * Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * dependency at wrong level * license bits * Remove py-zc-buildout dependency
2019-12-18add new package : filebench (#14158)darmac1-0/+40
* add new package : filebench * remove alpha version and duplicated autoheader cmd * refine automake cmd in sh() * refine filebench url as a stable tarball link
2019-12-18add new package : hama (#14159)darmac1-0/+22
* add new package : hama * mv hama/hama/package.py to hama/package.py
2019-12-18Hbase (#14161)darmac1-0/+27
* add new package : hbase * add hbase description * refine hbase version and depends
2019-12-18root: Rationalize and improve version, variant and ROOT option handling. ↵Chris Green2-258/+357
(#14203) * root: Rationalize and improve version, variant and ROOT option handling. * Completely re-vamp CMake option handling for readability and maintainability: * Three categories of option: control, builtin and feature, alphabetically sorted. * Each option is described as a list: an option name followed by an optional value which is either Boolean or a string representing the name of a variant. If the value is omitted, it defaults to the option name. * New functions `_process_opts()` and `_process_opt()` (nested) to turn all supplied option/value specifications into CMake arguments. * Remove overly-terse per-option comments in favor of (much) more comprehensive notes in README.md. * Variants and conflicts: * Remove `test` variant in favor of pegging ROOT `testing` option to the value of `self.run_tests` since the install is unaffected, per ROOT developer. * Remove commented-out and never-functional variants: `asimage`, `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia8`, `xinetd`. * New variant `vmc` (default `OFF`) to control the Virtual Monte Carlo interface. * Conflict: `+opengl` is incompatible with `~x`. * Conflict: `http` is now an unconditional conflict due to dependency issues (see README.md). * Remove commented-out and non-existent dependencies `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia`, `veccore` (per #13949). * New and changed options: * Option `pch` was inadvertently set to `OFF` due to its dependence on a nonexistent variant `pch`. As it happens its value is ignored in the ROOT configuration handling, so there was no deleterious effect. It has been fixed to `ON` to better reflect actual behavior pending enablement of tuntime C++ modules. * Add new versions 6.18.0{0,2,4}: * Require CMake 3.9 for 6.18.00+. * Add conflicts for variants `qt4` and `table` representing ROOT build options for which support was discontinued. Remove redundant conflict on \@master. * C++ standard is now specified with `-DCMAKE_CXX_STANDARD=X` rather than `-Dcxx=X`. * Remove old version 5.34.38 (wrong build system). See README.md for more details of option-related changes. * Flake8 * `rpath` option is a control option rather than a feature.
2019-12-18Add abseil-cpp package (#14208)Jimmy Tang1-0/+23
2019-12-18Add new DD4hep release and some forgotten build requirements (#14195)Hadrien G1-4/+6
* Add new DD4hep release and some forgotten build requirements * PR review suggestions Use master naming convention for development branch, and put versions in decreasing order.
2019-12-17package/gdal add v2.4.3 (#14204)Sinan1-0/+1
2019-12-17Update and Fix ROSE Package (#14186)Nathan Pinnow1-83/+70
* rose: Update boost dependency for rose * rose: Updated rose to version 0.9.12.45 * rose: Updated jdk dependency * rose: Updated rose to version 0.9.13.0 * rose: Fixed formatting * rose: Added maintainer and switch dependency to java@8
2019-12-17openPMD-api: 0.10.2 (#14201)Axel Huebl1-0/+1
Add the latest release of openPMD-api, v0.10.2
2019-12-17add new package : openresty (#14169)darmac1-0/+27
* add new package : openresty * remove rc version
2019-12-17add new package : nicstat (#14173)darmac1-0/+27
* add new package : nicstat * refine nicstat edit operation * refine CMODEL regex expression
2019-12-17Added package for Half C++ header-only library. (#14189)Brian Van Essen4-2/+33
* Added package for Half C++ header-only library. Fixed an checksum for Hydrogen 1.3.2. Cleaned up the Clara package to not create an empty bin directory. * Fixed flake8 * Added maintainer
2019-12-17add new package : haproxy (#14160)darmac1-0/+29
* add new package : haproxy * add url_for_version() and refine haproxy build code
2019-12-17add new package : cosbench (#14171)darmac1-0/+29
* add new package : cosbench * add cosbench depends and remove unstable version * Update var/spack/repos/builtin/packages/cosbench/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cosbench/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-17tf verbosity to better enable debugging (#14177)Sajid Ali1-0/+9
* tf verbosity * Add more debug flags modified: var/spack/repos/builtin/packages/py-tensorflow/package.py * Fix later * More debug/verbose options. modified: var/spack/repos/builtin/packages/py-tensorflow/package.py
2019-12-17sollve: add a version 1.0a2 (#14188)Shintaro Iwasaki1-0/+35
2019-12-17LAMMPS: Fix USER-REAXC package variant (#14192)Yuanqi Wang1-2/+2
2019-12-17Add py-scipy 1.4.0 (#14193)Adam J. Stewart1-2/+4
2019-12-17adios2: Fix use of builtin __clear_cache (#14123)t-karatsu2-0/+218
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