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Added v4.0.0 and workaround for cmake bug
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This patch does not apply cleanly anymore and breaks clang/Mac builds
balay@asterix /home/balay/git-repo/github/trilinos (develop=)
$ patch -Np1 < /home/balay/git-repo/github/spack/var/spack/repos/builtin/packages/trilinos/xlf_tpetra.patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- a/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
|+++ b/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
--------------------------
File to patch:
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* assimp: fix compile issues with intel compilers on knl/linux [a dependency for dealii]
Fixes issue #9189
* assimp: add variant 'shared' with default value 'True'
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* libmesh: Added SLEPC eigensolver variant.
* libmesh: Added new versions.
* Corrected flake8 errors.
* Corrected SLEPc variant with proper config & conflicts.
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* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement
* flake8 fixes
* fix formatting in jdk version cmd
* Added type=('build', 'run') to some R package dependencies,
added some missing dependencies to r-ks. Thanks Adam.
* fix flake8 error
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* xsdk: update xsdk@develop dependency on trilinos@develop
* trilinos: enable tpetra, ifpack2, zoltan2, amesos2
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Due to an internal bug regarding the handling of scalars
(ndim must be 0) in numpy prior to 1.15.0, openPMD-api
will require the latest numpy 1.15+.
Since there is a small regression with datetime pickling in
1.15.0 from the required fix and spack only packages 1.15.1
currently, we depend on 1.15.1 in the recipe.
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* add 5 most recent versions and git master branch
* add trilinos, gmodel, throw, examples, optimize, symbols,
and warnings variants
* disable XSDK so that Trilinos dependencies are found.
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* Update dmd.
* Build dmd and druntime.
* Build dmd.
* Restore edit.
* Flake8.
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* skilion-onedrive: a new package.
* Fix flake8 issues.
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* Bamdst: a new package.
* Remove duplicate make() in install().
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* r-summarizedexperiment: new version
* r-summarizedexperiment: add ending range for r3.4 dep
* r-summarizedexperiment: fix range
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* added py-pycogent
* flake8 edits
* added type=('build', 'run') to deps, changed py-matplotlib and mpi4py
* changed python min version to 2.6
* fixed cython to py-cython dep
* fixed mpi4py to py-mpi4py
* fixed py-sqlalchemy
* added 1.5.3 version
* fixed version 1.5.3 install
* changed deps names to reflect convention
* added variants
* changed download URL and added SHA256 hash
* fixed deps
* added github url for 1.5.3
* removed unneeded deps
* doesn't require py-setuptools
* fixed url and added py-setuptools specific to version 1.9
* fixed variant names and changed cython to normal dependency instead of variant
* removed cython dep, failed to build when it was present. Changed variant name 'mpi4py' to 'mpi' and changed sqlalchemy variant name to mpi
* fixed dependencies and added py-pymysql dep
* added setup-environment step
* changed download url for 1.5.3 to pypi
* fixed flake8 issue
* updated
* added changes
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* Addition of latest maestrowf releases.
* Addition of filelock to dependencies.
* Addition of when clause to depends_on for filelock and tabulate.
* Correction of the tar url.
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* r-genomicalignments: new version
* r-genomicalignments: ending range for r3.4 dep
* r-genomicalignments: fix range
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* r-biomart: new version;
* r-biomart: ending range for r3.4 dep
* r-biomart: fix version range
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* r-deseq2: new version
* r-deseq2: fix r 3.4 dep range
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* Trying to package old AIDA
* Document the incompleteness
* Install the jars too
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* added py-picrust
* flake8 edits
* fixed boilerplate, added type='build', 'run'
* fixed errors
* added deps
* fixed error
* fixed numpy max version
* fixed future version
* fixed version issues
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actually AutoTools, not CMake. (#9110)
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* py-pymysql: new package
* added type build and run
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* openblas@0.3.1:0.3.2: patch CMake export bug
See https://github.com/xianyi/OpenBLAS/pull/1703.
* openblas@0.3.1: new version
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* New package: CODES simulation framework
* CODES: add comments
* CODES: remove -fi from extra autoreconf flags
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Update the version numbers and now depend on
the develop version of dyninst because of a
feature in openspeedshop depends on new code
in the dyninst develop tree. Without dyninst
develop, openspeedshop will not build.
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* py-matplotlib: Add patch to fix FreeType library detection
Adds patch to add $CPATH to locations searched for FreeType header file
Patch has been upstreamed:
https://github.com/matplotlib/matplotlib/pull/11457
* py-matplotlib: Add patch to fix FreeType library detection
* Make patch only apply to versin 2.2.2 (as already upstreamed)
* Fix flake8 format issue
* py-matplotlib: add range to freetype patch
* py-matplotlib: whitespace
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1. I presently get errors of the sort
==> Error: KeyError: 'No spec with name mpi in silo@4.10.2%gcc@8.1.0+fortran+mpi
[...]
$HOME/spack/var/spack/repos/builtin/packages/silo/package.py:84, in configure_args:
81 'FCFLAGS={0}'.format(self.compiler.pic_flag)]
82
83 if '+mpi' in self.spec:
>> 84 config_args.append('CC=%s' % self.spec['mpi'].mpicc)
85 config_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
86 config_args.append('FC=%s' % self.spec['mpi'].mpifc)
without the extra explicit MPI dependency.
2. Silo uses zlib, so we should explicitly depend on it.
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Added SUNDIALS 3.1.2 and 4.0.0-dev.1 versions and relevant dependencies
(3.1.2 requires CMake 2.8.12). Updated all versions to use sha256 hashes.
Addressed issue specific to clang compiler on macOS.
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* Addition of py-filelock and first page of versions.
* Addition of setup.py patch for setuptools.
* flake8 failure fixes.
* Reduced url declaration to a single line.
* Correction to py-filelock to use distutils.
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Consolidate prefix calculation logic for intel packages into the
IntelPackage class.
Add documentation on installing Intel packages with Spack an
(alternatively) adding them as external packages in Spack.
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Add variant 'nls' for native language support with default True.
The default inside binutils was always on, but this gives a way of
turning it off, if desired.
Adjust the dependencies. Flex is never used for a one-time build.
Bison and m4 should not be needed, except that prior to rev 2.30, gold
did not include its generated files, so bison is needed when +gold.
Drop configure option --enable-interwork. This option does not exist.
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