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2020-08-13Buildcache: bindist test without invoking spack compiler wrappers. (#15687)Patrick Gartung4-9/+409
* Buildcache: * Try mocking an install of quux, corge and garply using prebuilt binaries * Put patchelf install after ccache restore * Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS * Remove mirror at end of bindist test * Add patchelf to Ubuntu build env * Revert mock patchelf package to allow other tests to run. * Remove depends_on('patchelf', type='build') relying instead on * Test fixture to ensure patchelf is available. * Call g++ command to build libraries directly during test build * Flake8 * Install patchelf in before_install stage using apt unless on Trusty where a build is done. * Add some symbolic links between packages * Flake8 * Flake8: * Update mock packages to write their own source files * Create the stage because spec search does not create it any longer * updates after change of list command arguments * cleanup after merge * flake8
2020-08-12Bugfix for #17999: use cudart instead of cuda. (#18000)Robert Blake1-1/+1
This is needed because libcuda is used by the driver, whereas libcudart is used by the runtime. CMake searches for cudart instead of cuda. On LLNL LC systems, libcuda is only found in compat and stubs directories, meaning that the lookup of libraries fails.
2020-08-12Hotfix: move CUDAHOSTCXX (#17826)Axel Huebl1-2/+3
* Hotfix: move CUDAHOSTCXX Set only in dependent packages. * dependent compiler
2020-07-23adept-utils: 1.0.1 does not build w/ boost 1.73.0 or newer (#17560)Scott Wittenburg1-1/+1
2020-07-23llvm-flang: Only build offload code if cuda enabled (#17466)Dr Owain Kenway1-3/+4
* llvm-flang Only build offload code if cuda enabled The current version executes `cmake(*args)` always as part of the post install. If device offload is not part of the build, this results in referencing `args` without it being set and the error: ``` ==> Error: UnboundLocalError: local variable 'args' referenced before assignment ``` Looking at prevoous version of `llvm-package.py` this whole routine appears to be only required for offload, some indent `cmake/make/install` to be under the `if`. * Update package.py Add comment
2020-07-10Fix gcc + binutils compilation. (#9024)cedricchevalier191-3/+1
* fix binutils deptype for gcc binutils needs to be a run dependency of gcc * Fix gcc+binutils build on RHEL7+ static-libstdc++ is not available with system gcc. Anyway, as it is for bootstraping, we do not really care depending on a shared libstdc++. Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2020-07-10inel-mpi: fix for wrong structure name instroduced in ea8a0be4 (#17382)TZ1-1/+1
it's mpi_compiler_wrappers and not mpi_compiler._wrappers fixes 2nd part of #17371
2020-07-10Fix Intel MPI super invocation, again (#17378)Adam J. Stewart1-1/+1
2020-06-30cmake v3.17.3 (#17313)Andrew Gaspar1-0/+1
2020-06-30half: fix __F16C__ include of immintrin.h (#17272)Andrew W Elble2-0/+25
Small fix so that immintrin.h gets included properly when the compiler sets __F16C__. Upstream has been notified.
2020-06-30filebench:remove autoreconf() (#17305)darmac1-8/+0
2020-06-30add constrain for hpx 1.4.* and boost 1.73.0 (#17307)albestro1-0/+4
https://github.com/STEllAR-GROUP/hpx/issues/4728#issuecomment-640685308
2020-06-30cleverleaf: Add C++ link flags for Fujitsu. (#17308)Tomoki, Karatsu2-0/+14
2020-06-30Add OpenFOAM 2006 (2020-06) release (#17309)Mark Olesen1-0/+1
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-06-30Catch2 v2.12.3 (#17312)Andrew Gaspar1-1/+7
Added master branch, too
2020-06-30[whizard] Fix Runtime Compiler Paths (#17300)vvolkl1-0/+12
* [whizard] fix runtime compilers fix * [whizard] flake8 * [whizard] add master branch
2020-06-30[py-mdanalysis] new version and added dependencies (#16819)Jen Herting1-10/+36
* [py-mdanalysis] new version and added dependencies Original commit message: Author: Andrew Elble <aweits@rit.edu> Date: Thu Nov 14 08:35:14 2019 -0500 mdanalysis * [py-mdanalysis] python is type build/run * [py-mdanalysis] updated numpy version requirement for all listed versions of py-mdanalysis * [py-mdanalysis] updated biopython version requirement for all listed versions of py-mdanalysis * [py-mdanalysis] updated py-griddataformats version requirement for all listed versions of py-mdanalysis * [py-mdanalysis] gsd only required after version 1.17.0 and requires gsd@1.4.0 * [py-mdanalysis] only requires mmtf-python after version 0.16.0 and requires version 1.0.0 * [py-mdanalysis] has required py-joblib since version 0.16 * [py-mdanalysis] updated py-scipy version requirement for all listed versions of py-mdanalysis * [py-mdanalysis] updated py-matplotlib version requirement for all listed versions of py-mdanalysis * [py-mdanalysis] has required py-mock since version 0.18.0 * [py-mdanalysis] py-scikit-learn only required after version 0.16.0 and only for +analysis variant * [py-mdanalysis] Reordered and reformatted for readability * [py-mdanalysis] flake8 fixes * [py-mdanalysis] proactively adding version 1.0.0 while I'm here since major release * [py-mdanalysis] fixing some forgotten colons
2020-06-30[py-crossmap] added version 0.3.9 (#17233)Jen Herting1-2/+2
* [py-crossmap] added version 0.3.9 * [py-crossmap] py-numpy not required * [py-crossmap] py-cython must be >= 0.17
2020-06-30[ruby] fixing path to gcc such that users can use gem to install nati… ↵Jen Herting1-0/+11
(#17141) * [ruby] fixing path to gcc such that users can use gem to install native gems to their home directory * [ruby] working on making flake8 happier * [ruby] Line can't really be split cleanly. Enhancing flake8's calm. ya learn something new every day... * [ruby] line break where requested * [ruby] make raw string * [ruby] only running for x86_64-linux everything else is untested * [ruby] finding rbconfig.rb in a cross platform manner
2020-06-30New package/graphblast (#17289)Sinan1-0/+42
* new package: GraphBlast * polish * add cuda_arch setup * flake8 * the package requires cuda variant and dependency * add comments * define cuda_arch * implement multiple and custom cuda arches * tidy up, improve * flake8 * improve style * add variant description * use patch method, add new version for latest commit building since master now fails * remove gcc conflict, tidy up * also indicate build range for boost Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-06-30dssp: new package at v3.1.4 (#17188)Harsh Bhatia2-5/+42
Renamed xspp to hspp
2020-06-30postgis: added package at v3.0.1 (#12635)Sinan1-0/+81
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-06-29py-mpi4py: Implement headers Property (#17295)Sebastian Gottfried1-0/+5
py-mpi4py installs its header files at a difficult-to-predict location: $prefix/lib/python-x.y/site-packages/mpi4py/include With the new `headers` properties, dependent packages have now an easy way to obtain this location: spec['py-mpi4py'].headers.directories[0]
2020-06-29New package: hepmcanalysis (#17296)iarspider2-0/+105
* [WIP] Add hepmcanalysis package * Implement install() for hepmcanalysis * Flake-8 Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29R: new versions (#17297)Amjad Kotobi1-0/+2
2020-06-29GDAL: add v3.1.1 (#17302)Adam J. Stewart1-1/+2
2020-06-29Some files could not be created due to errors, which have been fixed. (#17250)h-denpo6-20/+368
added support for Fujitsu compiler.
2020-06-29cp2k: variant tuning `lmax` was broken (#17266)Fabien Bruneval1-1/+1
* cp2k: variant tuning `lmax` was broken - `spack install cp2k lmax=6` now works * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/cp2k/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29New package py-networkit (6.1, 7.0) (#17195)Fabian Brandt1-0/+42
2020-06-29New package: coin3d (#17251)iarspider1-0/+51
* New package: coin3d * Update package.py * Flake-8 * Update var/spack/repos/builtin/packages/coin3d/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add link-time dependencies * Add configure flags for boost; remove version 4.0.0 (doesn't compile) Co-authored-by: iarspider <iarpsider@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29nfs-utils: fix compile error on debian (#17292)darmac1-0/+1
use pkgconfig to detect libtirpc
2020-06-29New package: fjcontrib + new variants for fastjet (#17255)iarspider2-0/+95
* New package: fjcontrib + new variants for fastjet * Flake-8 * Flake-8 once more * Update package.py * Allow choosing which plugins to build Build all plugins by default. * Flake-8 * Always build all plugins * Update package.py Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29codar-cheetah: added v1.1.0 and v1.0.0 (#17286)Kshitij Mehta1-1/+3
2020-06-29geant4: depends on "qt@5: +opengl" when +qt (#17264)Wouter Deconinck1-1/+1
The Geant4 cmake check requires Qt5OpenGL_FOUND, so we must require the Qt5 +opengl variant. If not, the cmake phase fall through to Qt4 and fails due to a missing Qt4::QtGui target. In Geant4InterfaceOptions.cmake: ``` if(Qt5Core_FOUND AND Qt5Gui_FOUND AND Qt5Widgets_FOUND AND Qt5OpenGL_FOUND AND Qt5PrintSupport_FOUND) ``` Ref: https://github.com/Geant4/geant4/blob/master/cmake/Modules/Geant4InterfaceOptions.cmake#L90 (5baee230e93612916bcea11ebf822756cfa7282c, Import Geant4 10.6.0 source tree)
2020-06-29fujitsu-mpi: added "headers" and "libs" methods (#17253)Tomoki, Karatsu1-0/+19
2020-06-28Prevent libffi 3.3 from adding contradictory tuning flags (#17285)Seth R. Johnson1-0/+8
Fixes #17187
2020-06-28package/qgis: add new versions (#17284)Sinan1-1/+7
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-28intel: added new versions (#17287)Amjad Kotobi1-0/+2
2020-06-28vmc: New Package (#17282)Dr. Christian Tacke2-0/+79
"""The Virtual Monte Carlo (VMC) library"""
2020-06-28redis: add config file from source code (#17225)darmac1-0/+5
* redis: add config file from source code * Update var/spack/repos/builtin/packages/redis/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28WarpX: Development Branch (#17163)Axel Huebl1-2/+2
* WarpX: Development Branch Update the name of our development branch. * WarpX version: develop keyword development is not a "newest"-like keyword, but `master`/`develop`/`dev` are. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Renamed: develop version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-27make gcc build on aarch64 (#17280)Greg Becker1-6/+8
2020-06-27CUDA: CUDAHOSTCXX Env (#16869)Axel Huebl1-0/+2
This is a general CMake CUDA language hint to use the CXX compiler has host compiler for NVCC. Seems like a good default since we do not express the CUDA compiler in Spack otherwise yet (e.g. no `self.compiler.cuda` or `self.compiler.cudahostcxx`).
2020-06-27perl-date-manip: New Package Date::Manip (#17259)Dr. Christian Tacke1-0/+22
2020-06-27[gaudi] new version, cleanup (#17268)vvolkl1-14/+6
2020-06-27Patch needed also for version 7.0 (#17269)Fabian Brandt1-1/+1
2020-06-27LIBXSMM 1.16.1 (#17274)Hans Pabst1-1/+2
2020-06-27migrate to git and update commit (#17276)albestro1-2/+2
2020-06-27superlu-mt: add pic and int64 variants (#11361)David Gardner1-2/+20
* add pic and int64 variants * update to Language-specific PIC flags
2020-06-26Fix super invocation in Intel packages (#17248)Adam J. Stewart2-2/+2
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