Age | Commit message (Collapse) | Author | Files | Lines |
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The py-pomegranate package is a dependency of py-cnvkit
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This PR adds py-pymc3 and py-arviz as a dependency.
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Details about ILP64 support: `INTERFACE64=1` are described on the [ARPACK-NG GitHub website](https://github.com/opencollab/arpack-ng).
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Version 4.3.1 only works with Python3. Version 4.3.2 also works
with Python2. These constraints were not listed before and are added
by this commit.
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Also add dependency on py-cached-property
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Also Adding conflict for SQLite and ADIOS2 for older TAU releases
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LLVM is the only package that explicitly sets the "termlib" variant
of ncurses and it specifies +termlib. ncurses defaults to ~termlib;
if a package depends on LLVM and ncurses, there is a concretizer bug
that incorrectly detects a constraint conflict (see #267). Setting
+termlib as the default is a stopgap measure to avoid this conflict.
If other packages were to explicitly request ~termlib in the future,
the same issue would come up again (and could not be resolved by
adjusting the default of "termlib").
Setting +termlib on ncurses moves some symbols into a separate
"libtinfo". Not all packages may be able to detect libtinfo properly
so may require an update; vim, samtools, and libedit have been
updated to use ncurses+termlib (in the case of libedit, the only
necessary action was to add a newer version where the build system
was updated to check libtinfo).
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* Flake8 OK
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Added missing dependencies proposed by @adamjstewart
* Without py-versioneer
* Added py-versioneer
* Python2 for bse
* Python build error
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Removed py-versioneer, according to @adamjstewart
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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- When compiling qrupdate with `FFLAGS=-fdefault-integer-8` it can be perfectly used for larger problem dimensions.
- Improved the readability of the file with the added rules.
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and library paths. (#15189)
Setup package to use MPI the way Spack recommends, and remove extra iowrapper option from configure
Making flake happy
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Release notes: https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.7.1
Version 5.7.0 was an incomplete release.
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* update flecsi and legion package.py
* comment out a conflict
* update to use extend
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* add new package : agrep
* agrep: move binary to bin/
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* Aded extra versions for OCaml
* Added maintainer
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The newer versions of SZ now uses CMake to build.
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* Update py-bx-python package
- add update to py-bx-python
- switch to pypi downloads
- set dependencies
* Update var/spack/repos/builtin/packages/py-bx-python/package.py
I had initially pulled version 0.8.6 and then updated that to 0.8.8 but missed the change in the python specs between those two versions.
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Fix version 0.7.4
- set dependency on python2
- add dependency on py-python-lzo
- add py-python-lzo package
- set py-numpy dependency to correspond to latest version that works
with python2
* Add constraint for py-six dependency
* Update var/spack/repos/builtin/packages/py-bx-python/package.py
Ah, I had that `when` clause in and then took it out as it did not seem to be needed. I guess it is always better to be more explicit.
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Remove py-numpy constraint
Let the concretizer catch the conflict with python2 and py-numpy
versions.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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This PR depends on #15175
- add updated version
- set depedencies
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* add new package : batctl
* batctl: move binary to bin/
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* add new package : bubblewrap
* bubblewrap: remove some comment in package.py
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* Fixes & additional variant(s) for HepMC3
* Syntax
* Restore recipe for HepMC2
* Remove FIXME
* Update package.py
* Apply suggestions from code review
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Mark silo+silex as requiring QT4
* Add missing readline dependency to silo
* Fix silo QT4 usage and verify silex works on mac
```
-- darwin-mojave-x86_64 / clang@11.0.0-apple --------------------
7gdcud4 silo@4.10.2+fortran~mpi patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe +pic+shared+silex
pk3wbwd hdf5@1.10.6~cxx~debug~fortran+hl~mpi+pic+shared+szip~threadsafe
slsy6ko libszip@2.1.1
xj36ejk zlib@1.2.11+optimize+pic+shared
u4662xx libx11@1.6.4
3lpe6j3 qt@4.8.7~dbus~examples~framework freetype=none ~gtk~opengl patches=03f9893882c63a9a9617d9ecab9caf80661c96df13f596a9b24fc4579490144a,a4f37427b34d88df6a6adc16e1e6c805087d4f3a7c658e1797450b0912fcbf5d,f17e0b5fb1f43bccadf7298533eca57294f4acab11ed83b176c61c441f745c19 ~phonon+shared~sql~ssl~tools~webkit
shdhdbh glib@2.56.3~libmount patches=c325997b72a205ad1638bb3e3ba0e5b73e3d32ce63b2d0d3282f3e3a2ff4663c tracing=none
msyeqht gettext@0.20.1+bzip2+curses+git~libunistring+libxml2+tar+xz
ysmjykg bzip2@1.0.8+shared
w354vrb libxml2@2.9.9~python
jg6ekuh libiconv@1.16
b7n722h xz@5.2.4
zbgxvxi ncurses@6.1~symlinks~termlib
2e6sifw tar@1.32
7yg7qah libffi@3.2.1
zg55iyu pcre@8.43~jit+multibyte+utf
zqrlxlz perl@5.30.0+cpanm+shared+threads
un7wzvl python@3.7.4+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations patches=210df3f28cde02a8135b58cc4168e70ab91dbf9097359d05938f1e2843875e57 +pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib
l4gxq46 expat@2.2.9~libbsd
3t4dwsv gdbm@1.18.1
h2bjtz2 readline@8.0
ugvknwc openssl@1.1.1d+systemcerts
hsmq6ou sqlite@3.30.1~column_metadata+fts~functions~rtree
lpfob23 icu4c@65.1 cxxstd=11
lf66vbr inputproto@2.3.2
afovyhg libjpeg-turbo@2.0.3
5dgw556 libmng@2.0.3 build_type=RelWithDebInfo
3z4lw2w lcms@2.9
flleuyu libtiff@4.0.10
67tigfp libpng@1.6.37
```
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Newer versions of LLVM provide a one-line command to set up LLDB code
signing. Now the build will abort only if this command fails.
https://lldb.llvm.org/resources/build.html#code-signing-on-macos
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* sundials: add version 5.1.0 and trilinos variant
* sundials: add version 5.1.0 and trilinos variant
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* Necessary changes to get lbann develop to compile.
* Reformatting for flake8
* More flake8 changes.
* Removing redundant clara dependency.
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* shtools: New package
* shtools: Convert to MakefilePackage, use Spack's generic compiler flags
* shtools: Make function location explicit
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* Add extra version of py-jsonschema
* Update dependencies
* Update dependencies + flake8
* Add py-pyrsistent package
* Update package.py
* Update var/spack/repos/builtin/packages/py-jsonschema/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* Update package.py
* Apply suggestions from code review
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Apply suggestions from code review
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add a variant to QE that suppresses upstream patching. Need in order to do ddependency patching.
* QE variant fails to build often. Set default variant to False as a user friendly change.
* QMCPACK converter patch collides with internal QE patches. Deactivate internal patches when performing dependency patching.
* Clearer description of QE patch variant that is also flake8 compliant.
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* Disable qt3d when opengl is disabled
* Remove `-skip qtquick3d` unless QT 5.14
Found while checking build of qt 5.14.
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* Add extra version of py-sqlalchemy
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Apply suggestions from code review
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Create package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Update var/spack/repos/builtin/packages/decentralized-internet/package.py
Commit suggestion
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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The hashing logic looks for function calls that are Spack directives.
It expects that when a Spack directive is used that it is referenced
directly by name, and that the directive function is not itself
retrieved by calling another function. When the hashing logic
encountered a function call where the function was determined
dynamically, it would fail (attempting to access a name attribute
that does not happen to exist in this case).
This updates the hashing logic to filter out function calls where the
function is determined dynamically when looking for uses of Spack
directives.
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* libf77zmq
* Cleaning mkdirp
* Removed install function
* Renamed to f77-zmq
* Fixed Flake8
* Fixed Flake8
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* Add extra version of py-terminado
* Update package.py
* Update var/spack/repos/builtin/packages/py-terminado/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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