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2018-10-30GCC: ISL and mpfr upper bounds (#9513)Axel Huebl2-6/+14
* GCC: constrain version 6, 7, and 8 to build with ISL version at most 0.18 * GCC version 9 (not yet released) will be compatible with ISL version 0.20 so future GCC releases are constrained to build with ISL version at most 0.20 * ISL: Add v0.15, replace all md5 sums with sha256 sums for ISL versions * GCC versions before 6 were constrained to build with ISL 0.14 but have been confirmed to work with ISL 0.15 * GCC: Place an upper bound on GCC's mpfr dependency
2018-10-30vtk: remove redundant option setting (#9597)Ruben Di Battista1-7/+0
This eliminates duplicates for a couple options which are set multiple times.
2018-10-30caliper: specify path to libunwind (#9670)Abhinav Bhatele1-0/+2
2018-10-30warpx: Fixes for building on NERSC (#9671)Dave1-0/+6
2018-10-30Jthies/xsdk add phist (#8980)jthies2-3/+37
* packages/phist: add variant 'fortran' to enable/disable building the Fortran bindings * xsdk: add phist * packages/xsdk: add a comment reg. updating phist dependency * packages/phist: +fortran variant is only for versions 1.7: * packages/phist: update comments * xsdk: forgot to specify kernel library for phist (picked tpetra, assuming trilinos+tpetra will be installed) * packages/phist: add variant 'openmp' to allow disabling OpenMP * phist: fix compile error due to missing -lm * flake8: fix warnings * packages/phist: fix cmake flag: XSDK_ENABLE_Fortran (rather than XSDK_BUILD_Fortran) * packages/phist: allow disabling building the scamac matrix generator (which causes trouble on some systems) * packages/xsdk: disable scamac within phist because it caused problems for @balay and is not essential for now * packages/phist: actually disable scamac via cmake if ~scamac * phist: disable openmp from xsdk
2018-10-30packages/phist: new version 1.7.3 (#9672)jthies1-0/+1
2018-10-29R rjags - new version (#9568)Dan Han1-1/+3
* REMOVED: -callr: updated to newest version, added sha256, added listurl * r-rjags: updated * r-rjags: fix new version
2018-10-29hoomd-blue: fixing issue during build with newer cmakes (#9543)snehring1-1/+4
* Constrain to build with CMake <= 3.9.6 * Specify installation prefix to match install prefix format of other Spack python libraries
2018-10-29strumpack: update to version 3.1.1 (#9666)Satish Balay1-0/+1
2018-10-29slepc: update to version 3.10.1 (#9665)Satish Balay1-0/+1
2018-10-29add package Feature/sentieon (#9557)Miles Perry1-0/+39
* added package sentieon * change file location * updated spack header license and added license_vars * fixed flake8 error * fixed license header * fix license header * license * added import os.path * edits * flake8 edits
2018-10-29orca: new package starting at 4.0.1.2 (#9297)Justin Stanley1-0/+46
* orca: new package starting at 4.0.1.2 * orca: fix typo * orca: fix boilerplate * orca: reorder deps, add openmpi runtime dependency * orca: license update
2018-10-29Expand the libMesh dependency list (#9642)David Wells1-17/+182
This commit overhauls the libMesh package script in a number of ways: * We now inherit from AutotoolsPackage. * libMesh contains about a dozen third-party dependencies that can only be provided by the copy bundled with libMesh. This patch enumerates all such bundled dependencies and disables all of them by default. * libMesh supports compilation with external installations of boost, eigen, hdf5, slepc, and tbb; this patch adds all of them to package.py. * libMesh will look for a few system executables (xz, bzip, gdb) by default. This is now disabled. * libMesh will now used a copy of perl installed by spack instead of trying to find the system copy. * Compilation with non-system MPI installations requires an additional flag (--with-mpi=); this has been added.
2018-10-29diy: new package (#9628)Dmitriy1-0/+21
2018-10-29Updated octave and gnuplot versions (#9660)Denis Davydov2-0/+4
* octave: add 4.2.2, 4.4.0 and 4.4.1 * gnuplot: add 5.2.5
2018-10-26pyfypp: add setuptools build dependency (#9650)Denis Davydov1-0/+2
2018-10-26damaris: add support for VisIt and Catalyst (#9651)dorier1-5/+17
2018-10-26new package: phyluce (starting at 1.6.7) (#9633)Justin Stanley1-0/+44
2018-10-26VisIt: build vtk without mpi support (#9649)dorier1-1/+1
VisIt cannot use VTK built with mpi support (which was enabled by default starting in #9494)
2018-10-26valgrind: add 3.14.0 (#9648)Denis Davydov1-0/+1
2018-10-26new package: msmc (starting at 1.1.0) (#9654)Justin Stanley1-0/+34
2018-10-26kokkos: add pic option (#9643)Jonas Lippuner1-0/+8
Since kokkos only compiles a static library, the -fPIC compiler flag is required to link kokkos into a Fortran executable
2018-10-26fmt: add new versions and update constraints (#9634)Federico Ficarelli1-11/+26
Update versions and constraints on cmake and supported toolchains (as stated by the documentation).
2018-10-26cabana: added v0.1.0 (#9644)Christoph Junghans1-1/+2
2018-10-25Fix issue with miniconda attempting to install the incorrect version (#9589)Ross Miller2-8/+8
The install() function in the miniconda2 & 3 package.py files referenced self.url, which is hard-coded to 4.3.11. That's not necessary the version that the user requested, though. Changed the install() function to reference self.stage.archive_file. Also added a version string for 4.5.11.
2018-10-25nag: fix NAG Fortran Compiler MD5 checksum for 6.1; add 6.2 checksum (#9617)Will Furnass1-1/+2
2018-10-25LLVM: add older version and gcc constraint (#9614)sknigh1-0/+19
- Added v 5.0.2 - Added conflict with gcc 8 for versions that do not build
2018-10-25updated URL format for Catalyst package when version is greater or equal to ↵dorier1-3/+6
5.6 (#9611)
2018-10-25r-goplot: fix r-rcolorbrewer version format (#9631)Justin Stanley1-2/+1
2018-10-25package nccl: Fix install_targets for verison 2.3.5-5: (#9623)jkelling1-1/+4
2018-10-25r-argparse: remove unnecessary r-getopt version (#9638)Justin Stanley1-1/+1
There is no checksum for r-getopt@1.19 and this package is compatible with the latest version anyway.
2018-10-25spades: add conflict with older gcc (#9640)Justin Stanley1-0/+3
2018-10-25new package: karma (#9571)Miles Perry1-0/+39
2018-10-25unifycr: new package (#9594)Cameron Stanavige1-0/+95
2018-10-25hdf5: add version 1.10.4 (#9625)Matthias Diener1-2/+3
2018-10-25suite-sparse: add GCC version constraint (#9622)Denis Davydov2-1/+2
Move suite-sparse gcc version constraint from dealii to suite-sparse package and update it (gcc 4.9 is required as of version 5.2.0 rather than 5.1.0). The constraint is now expressed as a conflict rather than a dependency.
2018-10-25Package VisIt: updated visit package (#9433)dorier1-14/+46
* updated visit package * make hdf5 and silo conflict with ~gui variant * Changed parallel => mpi and quotes in description * Corrected +mpi variant in VisIt package The previous commit introduced a bug (+parallel variant wasn't renamed +mpi), and the +mpi variant wasn't True by default. This is corrected.
2018-10-25spdlog: add new versions (#9636)Federico Ficarelli1-0/+4
2018-10-25git: add new version 2.19.1 (#9637)Matthias Diener1-0/+5
2018-10-24Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)Jon Rood4-4/+20
2018-10-24py-pyarrow: new package (#9416)Matthias Wolf2-0/+46
arrow: add missing dependency for python build The Parquet library moved into the Arrow organisation, hence add a parquet flavor and adapt dependencies.
2018-10-24Warpx: non-conditional dependency on MPI (#9587)Dave1-1/+1
2018-10-24New package: Damaris (#9601)dorier1-0/+52
2018-10-24flux-core & flux-sched: update versions and dependencies, fix git tags (#9610)Stephen Herbein2-6/+19
* flux: ensure git tags are always available previous `--unshallow` would only run when `--depth 0` was used. If 1--single-branch` was used, then the `.git/shallow` file would not exist and `--unshallow` would not work. add v0.6.0 and update dependencies accordingly update dependencies to match latest flux versions adds support for python 3 increases precision of czmq version required for older flux versions adds new lz4 dependency
2018-10-22pumi: add version 2.2.0 (#9606)Cameron Smith1-0/+1
2018-10-22added stat version 4.0.1 (#9607)Gregory Lee2-6/+9
* Add stat version 4.0.1 * stat 4.0.1: requires py-xdot * stat versions at or above 4.0.0 dont require python 2 (it still requires python but can build with 2 or 3) * stat versions at or above 4.0.0 dont require py-pygtk and py-enum34 * Replace py-xdot version 0.9.1 with 1.0 * py-xdot: use lib directory vs. lib64 for atk dependency
2018-10-22plasma: add 18.10.0 and fix URL (#9608)Satish Balay1-1/+2
2018-10-22hypre: update to version 2.15.1 (#9602)Satish Balay1-0/+1
2018-10-22sundials: update to version 3.2.1 (#9603)Satish Balay1-1/+2
2018-10-22PLASMA: add version 18.9.0 (w/CMake) (#9489)Piotr Luszczek2-55/+49
* Add version 18.9.0 (w/CMake) * Add version dependent install methods to handle transition from Make-based package (17.1) to CMake-based package, using the NEST package as an example * Remove unnecessary build_targets method for older Make-based version * Don't retrieve just the C/Fortran interfaces for netlib-lapack - blas/lapack libs are now handled the same for all implementations * Remove netlib-lapack detection patch