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2018-08-24new package: GSL - C++ Guideline Support Library (#9091)Hadrien G1-0/+51
Since "GSL" is a highly overloaded acronym, the package name is "cppgsl".
2018-08-24Update the pocl package (#9090)Hadrien G1-7/+20
* Update the pocl package * Use url_for_version * Clarify hwloc version requirements * Apply hwloc dependency suggestion
2018-08-24Add new CLHEP releases and move to sha256 hashes (#9089)Hadrien G1-19/+20
2018-08-24range-v3 package (#9093)Hadrien G1-0/+59
* Add first version of a Range-v3 package * Add C++ standard variant to range-v3 package
2018-08-23htop: add version 2.2.0 (#9086)Matthias Diener1-0/+1
2018-08-23bison: add new version (#9085)Matthias Diener1-0/+1
2018-08-23lammps: add v20180822 (#9081)Christoph Junghans1-0/+1
2018-08-23add cdo releases 1.9.4 and 1.9.5 (#9079)Brian Spilner1-0/+2
2018-08-23mvapich2: Use rdma-core for mrail and nemesis*ib* fabrics (#9072)Michael Kuhn1-1/+6
2018-08-22Open mpi add v3.1.2 (#9078)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Open MPI 3.1.2 built and tested Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-22libquo: Packaging updates. (#9076)Sam Gutiérrez1-6/+13
* libquo: Packaging updates. This commit accomplishes a few things: * Changes distribution fetch source * Removes a deprecated version (1.2.9) * Changes dependencies based on version type * Adds a custom autoreconf stage when using the 'develop' version, omitting this step when building from a distribution * Reintroduce v1.2.9.
2018-08-22glib: Add 2.56.2 (#9071)Michael Kuhn1-3/+4
This should finally fix build failures on RHEL6-based distributions. Also fix the patch to apply to the correct versions and distributions.
2018-08-22libfabric: Add develop version option. (#9074)Sam Gutiérrez1-0/+12
Add develop version option to libfabric, conditionally bringing in additional build dependencies: m4, autoconf, automake, libtool.
2018-08-22leveldb: Fix header installation (#9069)Michael Kuhn1-1/+1
leveldb headers are typically included via <leveldb/c.h>. The migration to install_tree in 73c978ddd99973e29f2ba42078b10455c1de5ca8 caused the headers to end up in prefix.include, which breaks existing applications.
2018-08-22r-genefilter: new version (#9063)Levi Baber1-1/+3
* r-genefilter: new version * r-genefilter: fix version in dep
2018-08-22r-annotate: new version (#9061)Levi Baber1-1/+3
2018-08-22r-geneplotter: new version (#9060)Levi Baber1-1/+3
2018-08-22r-qvalue: new version (#9059)Levi Baber1-1/+3
2018-08-22r-rtracklayer: new version (#9056)Levi Baber1-1/+13
2018-08-22r-genomicfeatures: new version (#9057)Levi Baber1-2/+14
2018-08-22r-delayedarray: new version (#9053)Levi Baber1-4/+8
2018-08-22r-genomicranges: new version (#9052)Levi Baber1-5/+12
2018-08-22r-genomeinfodb: new version (#9051)Levi Baber1-1/+6
2018-08-22r-genomeinfodbdata: new version (#9050)Levi Baber1-1/+4
2018-08-22r-rsamtools: new version (#9049)Levi Baber1-1/+10
2018-08-22intel-parallel-studio: add version 2018.3 (#9047)Matthias Diener2-0/+8
* intel-parallel-studio: add version 2018.3 * update intel package too
2018-08-22dealii: patch boost 1.68.0 (#9070)Denis Davydov2-8/+152
* dealii: patch boost 1.68.0 * indent for readability
2018-08-22r-biostrings: new version (#9048)Levi Baber1-1/+7
2018-08-21tests: add tests for warnings in build outputTodd Gamblin1-0/+47
- add tests for build warnings and error messages - simplify some code in build environment with plural() function
2018-08-21r-iranges: new version (#9041)Levi Baber1-1/+5
* r-iranges: new version * r-iranges: typo
2018-08-21r-biobase: new version (#9038)Levi Baber1-1/+3
* r-biobase: new version * r-biobase: reordering versions
2018-08-21r-biocgenerics: new version (#9039)Levi Baber1-1/+3
* r-biocgenerics: new version * r-biocgenerics: reordering versions
2018-08-21r-annotationdbi : new version (#9040)Levi Baber1-1/+3
* r-annotationdbi: new version * r-annotationdbi: dep type * r-annotationdbi: reordering versions
2018-08-21Add 1.6.1 release. (#9042)Sam Gutiérrez1-1/+2
2018-08-21r-s4vectors: new version (#9043)Levi Baber1-2/+4
2018-08-21r-zlibbioc: new version (#9044)Levi Baber1-2/+4
2018-08-21r-xvector: new version (#9045)Levi Baber1-1/+6
2018-08-21r-biocparallel: new version (#9046)Levi Baber1-1/+3
2018-08-20dealii: add constraint on suite-sparse for old gcc (#9026)Denis Davydov1-0/+1
2018-08-20dealii: blacklist boost 1.68.0 due to segmentation fault in serialization ↵Denis Davydov1-2/+3
lib (#9023)
2018-08-20update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928)Denis Davydov5-0/+9
2018-08-18Open MPI: add v2.1.5 (#9021)Daniel Topa1-0/+1
Final fix for v2.1 (hopefully) Test build on LANL CCSCS4, Desktop Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18Openmpi add v2.1.4 (#9006)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18chatterbug: new spack package (#8994)Abhinav Bhatele1-0/+65
2018-08-18QMCPACK Spack Package Update (Summer 2018) (#9008)Nichols A. Romero1-12/+21
* QMCPACK now supports QE 6.3. Dropped QE 5.3 due to incompatibilities. * QMCPACK general clean-up of depends_on. * Add QMCPACK 3.5.0 * More robust support of MKL detection in QMCPACK.
2018-08-18scorep: make optional packages variants (#9011)Abhinav Bhatele3-21/+128
* scorep: make optional packages variants add packages for cube sub-components: cubew, cubelib * fix style errors
2018-08-18Fix missing makefile variable in clapack package (#9016)Adam J. Stewart1-0/+1
2018-08-18CBLAS: Don't hardcode BLAS library name (#9017)Adam J. Stewart1-6/+6
2018-08-18Update bohrium version (#9020)Michael F. Herbst1-1/+2
2018-08-17install_tree: symlink handling and add 'ignore' option (#9019)scheibelp3-11/+12
Fixes #9001 #8289 added support for install_tree and copy_tree to merge into an existing directory structure. However, it did not properly handle relative symlinks and also removed support for the 'ignore' keyword. Additionally, some of the tests were overly-strict when checking the permissions on the copied files. This updates the install_tree/copy_tree methods and their tests: * copy_tree/install_tree now preserve relative link targets (if the symlink in the source directory structure is relative, the symlink created in the destination will be relative) * Added support for 'ignore' argument back to copy_tree/install_tree (removed in #8289). It is no longer the object output by shutil.ignore_patterns: you pass a function that accepts a path relative to the source and returns whether that path should be copied. * The openfoam packages (currently the only ones making use of the 'ignore' argument) are updated for the new API * When a symlink target is absolute, copy_tree and install_tree now rewrite the source prefix to be the destination prefix * copy_tree tests no longer check permissions: copy_tree doesn't enforce anything about permissions so its tests don't check for that * install_tree tests no longer check for exact permission matching since it can add file permissions
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