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2020-01-30fix: py-pillow build_ext vs. install (#14666)Andrew W Elble1-15/+20
Previously, the install stage would compile in things that were disabled during the build_ext phase. This would also result in the build pulling in locally installed versions of libraries that were disabled. The install process doesn't honor the same command-line flags that build_ext does, but does call build_ext again. Avoid the whole issue by just writing the options to setup.cfg Also, add the Imagemagick dependency for tests.
2020-01-30Updated docstring and version of lmod to v8.3 (#14687)Massimiliano Culpo1-7/+9
2020-01-30Add GDAL 3.0.4 (#14688)Adam J. Stewart1-1/+2
2020-01-30[py-joblib] added version 0.11 (#14672)Jennifer Herting1-0/+1
2020-01-30[r-manipulatewidget] added versions (#14674)Jennifer Herting1-0/+7
2020-01-30[r-rgl] added version 0.100.19 (#14675)Jennifer Herting1-0/+1
2020-01-29pumi: sim version check, meshes via submodule, ctest (#14597)Cameron Smith1-5/+17
* pumi: sim version check, meshes via submodule, ctest * Apply suggestions from code review Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * pumi: update comment on master version string * pumi: description of simmodsuite_version_check variant * pumi: add white space to variant description Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-29fix cycle dependency in libxml+python (#13847)Greg Becker2-2/+8
* fix cycle dependency in libxml+python * comment why we need these dependencies
2020-01-29Fastx-toolkit package: patch for Fujitsu compiler (#14218)noguchi-k2-0/+21
Specify the scope of pragma pack
2020-01-29Fix py-pillow tests (#14670)Adam J. Stewart1-2/+4
2020-01-29Added MiniAMR@1.4.4 (#14667)Robert Pavel1-0/+1
2020-01-29Added xsbench@19 to Version List (#14668)Robert Pavel1-0/+1
2020-01-29[py-griddataformats] added new versions (#14671)Jennifer Herting1-1/+3
2020-01-29pythia8: add new package (#14665)Michael Kuhn1-0/+29
2020-01-29py-pyperf: add 1.6.{0,1} (#14662)Matthias Wolf1-0/+2
2020-01-29flatbuffers: add 1.11.0 (#14663)Matthias Wolf1-0/+1
2020-01-29py-black: update url, add 19.3b0 (#14664)Matthias Wolf1-1/+2
2020-01-28git: add version 2.25.0 and fixup pcre dependency (#14649)Andrew W Elble1-2/+12
* git: add version 2.25.0 and fixup pcre dependency pcre2 became optional in 2.14 and the default in 2.18. I noticed this as git was compiling against the system pcre2 (spack was specifying pcre as the dependency). * missed a chunk from my internal repo
2020-01-28Set netcdf-fortran to build serially with Intel compiler (#14461)Glenn Johnson2-0/+16
* Set netcdf-fortran to build serially with Intel compiler This PR turns off parallel builds when the Intel compiler is used. Builds with the Intel compiler will fail otherwise. * Change how parallel build is handled Use patch from netcdf-fortran project to turn off parallel buildi for version 4.5.2.
2020-01-28racon: support aarch64 and fix install error (#14529)darmac2-4/+2808
* racon: support aarch64 and fix install error * add aarch64 patch for racon
2020-01-28pcma: set return value and change return type of function (#14579)noguchi-k2-0/+45
2020-01-28diffutils: Changed the handling of undeclared functions from warning … ↵t-karatsu1-0/+5
(#14593) * diffutils: Changed the handling of undeclared functions from warning to error. * diffutils: Change the handling of warnings or error * Delete '-Werror=implicit-function-declaration' * Add '-Qunused-arguments'
2020-01-28Build graphite2 with Intel compiler (#14636)Glenn Johnson2-0/+13
This PR sets the definition of REGPARM when building with the Intel compiler.
2020-01-28Moreutils: add new package (#14653)Matthias Diener1-0/+30
* moreutils: add new package * fix flake8
2020-01-28Fixed path for CEREAL and Protobuf (#14641)Brian Van Essen1-1/+4
2020-01-28openPMD-api: With ADIOS2 by Default (#14643)Axel Huebl1-5/+5
Replace the deprecated ADIOS1 backend default with ADIOS2 default. Disable sz since we do not need it and it conflicts with supported version ranges between ADIOS2 and ADIOS1 if someone enables both.
2020-01-28powerapi: add a space between literal and identifier (#14645)noguchi-k2-0/+189
2020-01-28med: add a space between literal and identifier (#14646)noguchi-k2-0/+23
2020-01-28intel-tbb: Fix install names on Darwin (#14650)Ben Morgan1-0/+7
* intel-tbb: Fix install names on Darwin Intel-TBB's libraries on Darwin are installed with "@rpath" prefixed to their install names. This was found to cause issues building the root package on Darwin due to libtbb not being found when running some of the generated tools linking to it. Follow example from other packages with the same issue and fixup up install names for intel-tbb post install. * intel-tbb: fix flake8 errors
2020-01-28Fix for #14148 (#14595)iarspider1-20/+28
* Dirty hack to fix #14148 * A better way of checking if a package is taken from system * Update var/spack/repos/builtin/packages/qt/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update qt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-28ninja: add v1.10.0 (#14647)Christoph Junghans1-0/+1
2020-01-27mpifileutils: add v0.10 (#14644)Adam Moody1-6/+7
Signed-off-by: Adam Moody <moody20@llnl.gov>
2020-01-27Add the py-merlinwf package (#14622)Joe Koning1-0/+38
* Add the py-merlinwf package * Fix importlib-resources package name for spack naming convention. * Add build to dependencies and add updated versions. * Remove pytest-runner dependency. * Fix typo. * Add the py-tabulate dependency. * Add sha256 for version 1.0.0 * Change to maestro version 1.1.5. * Increase to version 1.0.4. * Bump maestrowf version and prepare for new pypi version. * Add sha256sum for version 1.1.5 * Add version 1.1.1. Update maestrowf version to 1.1.7 * Add versions 1.0.5, 1.1.0, 1.1.1 and potential 1.2.0. * Add version 1.2.0 and when on maestrowf@1.1.6. * Add version 1.2.2 , remove 1.2.1 and 1.1.0. * Update var/spack/repos/builtin/packages/py-merlinwf/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-merlinwf/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Remove mysql variant until new mysql interface module is enabled. The mysql code may be removed. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-27asdf-cxx: new package (#14637)Erik Schnetter1-0/+47
2020-01-27amrex: Update to version 20.01 (#14635)Erik Schnetter1-0/+2
Now using Github releases instead of git commits.
2020-01-26pygdal and gdal versions should be in lockstep (#14630)Sinan1-1/+4
2020-01-26Add py-vermin package (#14631)Adam J. Stewart1-0/+23
2020-01-26simulationio: Correct HDF5 dependency bounds (#14626)Erik Schnetter1-1/+1
The HDF5 dependency bound was inverted. (How did this ever compile? There is a cmake check.)
2020-01-26hwloc: New version 2.1.0 (#14627)Erik Schnetter1-0/+1
2020-01-26curl: New version 7.68.0 (#14625)Erik Schnetter1-0/+1
2020-01-26Add TensorFlow 1.15.2 (#14624)Adam J. Stewart1-0/+1
2020-01-25h5cpp: Download from github release instead of git repo (#14573)Erik Schnetter1-3/+4
* h5cpp: Download from github release instead of git repo * Correct typo in package description
2020-01-25Add TensorFlow 2.0.1 (#14623)Adam J. Stewart1-0/+1
2020-01-25Get vtk-8.2.0 to build (#14562)Glenn Johnson1-2/+17
This PR adds some extra dependencies needed for vtk-8.2.0. It also handles the variable name changes to turn off some of the external libraries.
2020-01-25acts-core: Add and adapt to ACTS v0.14.0 and v0.15.0 (#14580)Hadrien G1-1/+7
* Add and adapt to ACTS v0.14.0 * Add v0.15.0 too
2020-01-25Removing flang variant from llvm package (#14600)Brian Homerding1-83/+6
2020-01-25libcircle: add v0.3 (#14611)Adam Moody1-0/+1
2020-01-24configure z3+python to build python libraries in its own prefix (#14604)Greg Becker1-3/+13
2020-01-24Get py-torch to build caffe2 (#14619)Glenn Johnson1-2/+31
* Get py-torch to build caffe2 This PR gets the py-torch package to build with caffe2, and closes issue #14576. If building on a machine with CUDA but no GPU the build will try to build with all compute capabilities. Older compute capabilities are not supported so the build will fail. The list of capabilities can be passed to the build using values set in the cuda_arch variant. Likewise, conflicts are also set to catch if the unsupported capabilities are listed in cuda_arch. This PR also sets version constraints on using an external mkldnn for newer versions. Currenly, only versions up to 0.4 use an external mkldnn library. Also, the cuda variant is set to True, which restores previous behavior. * Update var/spack/repos/builtin/packages/py-torch/package.py Fix typo. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Adjust conflicts This commit adjusts the conflicts. There is an issue with the cuda_arch=20 conflicts directive as there is a conflicting dependency with any version >=1.1 and a cuda_arch=20 dependency specified in CudaPackage that gets trapped first. * Use a common message for conflicts This commit adds a variable to contain the bulk of the message stringi for the cuda_arch conflicts. This is used along with a version string in the conflicts directives messages. * Fix the strings - Use a multiline string for the cuda_arch_conflict variable. - No need for format() in the msg value. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-24py-opppy package: add version 0_1_2 (#14229)Mathew Cleveland1-1/+2