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2016-12-15go: see #2567, temporary fix (#2588)Massimiliano Culpo1-2/+8
2016-12-15Add GNU patch to Spack. (#2598)Todd Gamblin1-0/+37
2016-12-14Blacklist flex 2.6.2 by commenting out package version (#2571)Jean-Paul Pelteret1-2/+4
Fixes #2554
2016-12-14Update texlive digest (#2591)George Hartzell1-1/+1
Texlive is *live*, they update the contents of their tarball on a whim. Here's the current one.
2016-12-13New package py-cdo (#2569)Kim Serradell1-0/+47
* Add python cdo support * Correct pypi url * Corrected a blanck space that was failing CI * Corrected url that was failing CI * Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis * Added cdo package depency
2016-12-13Merge pull request #2506 from skosukhin/pr_pythonGregory Lee1-29/+134
A couple of updates for python package.
2016-12-13Added support for xSDKTrilinos package (#2201)amklinv1-0/+100
* Added support for xSDKTrilinos package * Updated xsdktrilinos/package.py for PR review * Added trilinos version # reqs to xsdktrilinos * xsdktrilinos now uses CMakePackage * Cleaned up xsdktrilinos/package.py * Removed unused cxxflags from xsdktrilinos * Removed unused sys import from xsdktrilinos
2016-12-13likwid: remote root from INSTALL_CHOWN (#2564)Denis Davydov1-3/+3
2016-12-13slepc/petsc: fix python dependency (#2560)Denis Davydov2-3/+5
2016-12-13Updated python: refactoring and warning messages.Sergey Kosukhin1-36/+57
2016-12-13Updated python: pass LDSHARED to dependants' setup scripts.Sergey Kosukhin1-0/+88
2016-12-13Updated python: account for lib64 when filtering compilers.Sergey Kosukhin1-20/+16
2016-12-13Updated python: reformat code.Sergey Kosukhin1-10/+10
2016-12-12Add missing bzip2 dependency to freetype (#2536)Adam J. Stewart2-23/+21
* Add freetype dependency on bzip2 * Switch package with an install method for the docs
2016-12-12Doxygen: Add new version (#2561)Jean-Paul Pelteret1-0/+1
2016-12-12p4est: remove unneded lua dependency (#2559)Denis Davydov1-1/+0
2016-12-11New package - r-xgboost (#2493)Javier1-0/+54
2016-12-11atlas: fix lapack stage path (#2371)Denis Davydov1-5/+6
* atlas: fix lapack stage path * atlas: add a few links to other package managers
2016-12-11rename: add new package (#2486)Denis Davydov1-0/+45
2016-12-11likwid: add todo (#2531)Denis Davydov1-1/+9
* likwid: add todo * liwkid: add a note on hwloc dependency
2016-12-11numdiff: fix dependency type on macOS (#2538)Denis Davydov1-8/+2
2016-12-11Updated cmor: corrected way to set constraints for the extendee. (#2543)Sergey Kosukhin1-1/+2
2016-12-11Update Adol-C package (#2556)Jean-Paul Pelteret2-2/+3
Rename developer version, add new version, and make patch version specific.
2016-12-10clang: do xcode mockup iff requested by a package (#2544)Denis Davydov1-0/+2
* clang: do xcode mockup iff requested by a package * add a note * add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
2016-12-10Eigen 3.3.1 is latest stable version. (#2551)Stephen McDowell1-0/+1
Main page states [3.3.1 is latest stable](http://eigen.tuxfamily.org/index.php?title=Main_Page).
2016-12-10Scotch 6.0.4 is available. (#2552)Stephen McDowell1-0/+1
Source project page states [6.0.4 is latest stable](http://scotch.gforge.inria.fr/)
2016-12-10Implementation of spack file for Pflotran (#2444)Barry Smith2-1/+50
Supports installing both a "known version" of PETSc/PFlotran that works and the develop/master branches of both packages Funded-by: IDEAS Project: IDEAS/xSDK Time: 4 hour
2016-12-09update flux dependencies and package (#2541)Tom Scogland8-40/+90
* update flux dependencies and package * refinements from @adamjstewart * fix flux document generation The docbook-xsl package has been added, and correctly configures catalog files to generate documentation correctly with asciidoc.
2016-12-09astyle: do not set user/group when installing on macOS (#2542)Denis Davydov1-0/+5
* astyle: do not set user/group when installing on macOS * astyle: add new version
2016-12-09petsc: explicitly disable X11 (#2533)Denis Davydov1-2/+3
otherwise petsc may pickup libX11 on login nodes during config/build, but libX11 may not be available on computation nodes.
2016-12-08Added packages: cmor and uuid. (#2527)Sergey Kosukhin2-0/+108
* Added package 'uuid'. * Added package 'cmor'. * Updated 'cmor' and 'uuid': docstring formatting.
2016-12-08Add support for parsing R-XML URL versions. (#2525)Todd Gamblin1-1/+2
* Add support for parsing R-XML URL versions. * Better url-parse debug output. - just print the debug stuff all the time. * fix R-XML versions.
2016-12-08Update emacs: current release, use our x11 bits (#2052)George Hartzell4-12/+21
* Update emacs: current release, use our x11 bits Add checksum for 25.1 release. Rework the X support: - use Spack's X11 bits - add ability to specify an X toolkit (gtk or athena, default is gtk). - change toolkit names to align with Emacs' configure usage. * PEP8 cleanups. * glib dependency should not be type=build I'd like to blame that on a typo, but it's a few too many characters for that to be viable. I'm not sure what I was thinking. * Pass X variant down: emacs->pango->cairo * X variants default to False, warn on bad toolkit Change the X variants for emacs, pango and cairo to default to False. Check that the toolkit is a valid choice and give a reasonable error if not. * Fix flake8 issue, reword warning text * gtkplus needs to use +X variant for pango to work In order for a useful variant of pango to be built into the spec I needed to make the dependency on gtkplus explicitly specify it's X variant. The X variant is the default, but that wasn't enough to make it happy. Since it's happiness is the most imporant thing in the world, this change! :)
2016-12-08Scotch fails to build with latest flex (#2523)Adam J. Stewart1-1/+1
2016-12-08dealii: remove dependencies which are not needed (#2522)Denis Davydov1-4/+0
2016-12-07Add version/digest for emacs 25.1 (#2511)George Hartzell1-0/+1
* Add version/digest for emacs 25.1 * Put newest version at top of list
2016-12-07yaml-cpp: add boost dependency (#2517)Andrey Prokopenko1-3/+4
yaml-cpp has a boost dependency, and according to [yaml-cpp page](https://github.com/jbeder/yaml-cpp): yaml-cpp 0.5.3 has been released! This is a bug fix release. It also will be the last release that uses Boost; futures releases will require C++11 instead.
2016-12-07Building lua-luafilesystem requires a newish-git (#2515)George Hartzell1-0/+1
See #2059 for background. I'm unable to install `lmod` because lua-luafilesystem fails. The luarocks install bits attempt to do a shallow clone of the luafilesystem sources and the default git on my CentOS 7 test box (`git version 1.8.3.1`) fails. This adds a build dependency that ensures that a relatively modern git is available.
2016-12-07Update texlive digest value (#2514)George Hartzell1-2/+9
* Update texlive digest value While the discussion in #2494 progresses, this changes fixes the digest values so that builds succeeed. * Add warning that texlive is not repeatably installable
2016-12-07netcdf: add checksum for 4.3.3.1 version (#2509)Andrey Prokopenko1-3/+4
2016-12-07cmake: added checksum for 3.1.0 version (#2508)Andrey Prokopenko1-1/+2
2016-12-06hypre, superlu-dist, trilinos - support using develop/master branches of ↵Barry Smith3-2/+24
these packages (#2443) Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-12-06Fixed a few minor issues with the 'fontconfig' package install script. (#2491)Joseph Ciurej1-4/+4
2016-12-05hdf5: added 'pic' variant (#2373)Andrey Prokopenko1-0/+7
2016-12-05Add Java support to OpenMPI (#2285)Adam J. Stewart1-55/+93
* Update OpenMPI to the AutotoolsPackage * Add Java support to OpenMPI * Fix missing commas * Be more specific about what versions support what flags * Revert description for thread_multiple variant
2016-12-05py-rtree: Added package (#1548)Elizabeth Fischer2-0/+95
* py-rtree: Added package * py-rtree = RTree (spatial indexing) data structure for Python * libspatialindex = Underlying C library wrapped by py-rtree * Flake8 and Copyright issues. * Fix Python syntax error. * Fixed dependency type error. * Added new version, based on updates requested in upstream PR * 1. Change cmake to build dependency. 2. Updated to CMakePackage
2016-12-05ghostcript-fonts: fix install on macOS (#2482)Denis Davydov1-1/+7
2016-12-05xextproto: fix on macOS by not running parallel build (#2483)Denis Davydov1-0/+2
2016-12-03Update go to 1.7.4 and 1.6.4 to fix security issues (#2467)George Hartzell1-5/+20
* Update go to 1.7.4 and 1.6.4 to fix security issues The go team recently rolled out two releases to address security issues. Details available on the [go release site](https://golang.org/doc/devel/release.html). This commit updates our explicitly supported versions. It also includes a comment about two CentOS requirements (enable user_namespace and ensure that the static c library is installed) that are required for the pacakges to pass their tests. * Flake8 cleanup
2016-12-03zlib: added 'pic' variant (#2470)Andrey Prokopenko1-0/+12
It looks more complicated because zlib has custom configure which does not support CFLAGS option. So instead, we take it from environment.
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