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2020-11-16py-numpy: Add Fujitsu Fortran compiler to compiler type. (#19858)Tomoki, Karatsu6-0/+224
* py-numpy: Add Fujitsu Fortran compiler to compiler type. py-scipy: Specify Fujitsu to fcompiler types. * Create patches applicable to each version.
2020-11-16singularity: added v3.6.4 (#19939)Dr. Christian Tacke1-1/+2
2020-11-15fix a typo in podio package script (#19928)Joseph Wang1-1/+1
2020-11-14environment-modules: add version 4.6.1 (#19926)Xavier Delaruelle1-1/+2
2020-11-14Bugfixes for lbann sw stack (#19903)Brian Van Essen4-30/+80
* Added guard for setting CUB_DIR to only when cuda variant is true * Added support for OpenMP on OSX platforms * Updated the way that LBANN, Hydrogen, and DiHydrogen handle apple-clang with OpenMP and Clang installed on OS X via brew. * Fixed bug in spec resolution * Fixed merge conflict * Fixed typo * Fixed flake8
2020-11-14Add new package: druid (#19911)darmac1-0/+26
2020-11-14bpp-phyl-omics package (#19734)ilbiondo1-0/+25
2020-11-14PAPI package: added cuda and nvml support (#19896)G-Ragghianti1-2/+10
* Added cuda support * Added cuda and nvml variants * Refined version conflict logic.
2020-11-14bpp-seq-omics package (#19733)ilbiondo1-0/+22
2020-11-14Don't use prefix.lib in tcl/tk/glib/etc (#19761)Adam J. Stewart13-84/+79
2020-11-14nbdkit: new package at v1.23.7 (#19922)darmac1-0/+26
2020-11-14ncompress: new package at v4.2.4.6 (#19923)darmac1-0/+19
2020-11-14openblas: fix to build v0.3.11 or later with Fujitsu compiler. (#19853)Tomoki, Karatsu2-2/+17
2020-11-14libjson: new package at v0.8 (#19921)darmac1-0/+24
2020-11-14iproute2: new package at v5.9.0 (#19920)darmac1-0/+25
2020-11-14httping: new package at v2.5 (#19919)darmac1-0/+27
2020-11-14hashcat: new package at v6.1.1 (#19918)darmac1-0/+26
2020-11-14argon2: new package at v20190702 (#19917)darmac1-0/+23
2020-11-14newt: new package at v0.52.21 (#19915)darmac1-0/+20
2020-11-14mathematica : added v12.1.1 (#19842)Antonio Arena1-2/+7
2020-11-14nwchem: remove patches for v6.6 (no longer supported) (#19906)Edoardo Aprà1-31/+0
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
2020-11-14ipcalc: new package at v0.2.3 (#19912)darmac1-0/+29
2020-11-13[gcc] depends_on diffutils (for all versions) (#19907)Wouter Deconinck1-0/+1
2020-11-13Updated STAR to version 2.7.6a (#19904)Alexander Baumgarten1-1/+2
2020-11-13Feature/r tximportdata (#19902)Alexander Baumgarten1-0/+16
* # FIXME: Add a list of GitHub accounts to # FIXME: Add a list of GitHub accounts to Package for r-tximportData * Fixed file format / flake8 errors
2020-11-13binutils: Fix checksum for 2.35.1 (#19901)fodinabor1-1/+1
As noted in #19899 and introduced by #19827
2020-11-13Add sio and add it as possible dependency for podio (#19875)Thomas Madlener2-1/+65
Newest podio can use SIO as backend
2020-11-13AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, ↵arjun-raj-kuppala4-9/+21
hip-rocclr and atmi (#19832) * AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib * AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi * Update package.py * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/hip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-13suite-sparse: mpfr, gmp needed for @5.8.0: (#19898)eugeneswalker1-2/+2
2020-11-13bump up version for 3.9.0 (#19894)Sreenivasa Murthy Kolam1-1/+2
2020-11-13openfoam: Fix for aarch64 (#19803)t-nojiri1-1/+2
* openfoam: Fix for aarch64 * openfoam: Add comment for openfoam-org
2020-11-12ROCm 3.9 Stage2 recipe (#19838)Ganesh Kumar10-12/+22
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-12Add feq-parse package (#19891)Joseph Schoonover1-0/+21
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2020-11-12binutils: add version 2.35.1 (#19827)Tim Haines1-0/+1
2020-11-12openmpi: external detection support (#18600)Robert Blake1-0/+140
2020-11-12py-cython: python is a link dep (#19768)Adam J. Stewart1-2/+2
2020-11-12py-matplotlib: set LIBRARY_PATH to locate link deps (#19855)Adam J. Stewart1-1/+17
* py-matplotlib: set LIBRARY_PATH to locate link deps * py-matplotlib: add v3.3.3
2020-11-12OpenSSL: libs may be in lib64 directory (#19862)Adam J. Stewart1-1/+2
2020-11-12[gaudi] v35r0 (#19878)vvolkl2-27/+23
* [gaudi] v35r0 * [gaudi] format * [gaudi] comments from #19878
2020-11-12Add smoke tests to Ginkgo. (#19888)tcojean1-0/+7
2020-11-12suite-sparse: add deps: mpfr, gmp (#19883)eugeneswalker1-0/+2
2020-11-12py-vermin: add latest version 1.0.3 (#19886)Morten Kristensen1-1/+2
2020-11-12[acts] conflicts with %gcc@:7 since @0.23: due to c++17 <charconv> (#19881)Wouter Deconinck1-0/+1
2020-11-12new release: cdo-1.9.9 (#19876)Brian Spilner1-0/+1
2020-11-12elpa: Fix for aarch64 (#19872)t-nojiri1-0/+3
2020-11-12xsdk@0.6.0 (#19846)Satish Balay5-14/+103
Update: hypre@2.20.0 mfem@4.2.0 superlu-dist@6.4.0 trilinos@13.0.1 datatransferkit@3.1-rc2 petsc@3.14.1 dealii@9.2.0 pflotran@xsdk-0.6.0 alquimia@xsdk-0.6.0 sundials@5.5.0 plasma@20.9.20 magma@2.5.4 amrex@20.10 slepc@3.14.0 omega-h@9.32.5 strumpack@5.0.0 pumi@2.2.5 tasmanian@7.3 phist@1.9.3 ginkgo@1.3.0 py-libensemble@0.7.1 precice@2.1.1 butterflypack@1.2.1 New: heffte@2.0.0 slate@2020.10.00 Variants: datatransferkit heffte slate petsc: enable +cuda sundials: enable +cuda +trilinos strumpack: enable +cuda
2020-11-12Package/r bigalgebra (#19826)Desmond3-0/+61
* py-json-get: new package at 1.1.1 * py-json-get: new package at 1.1.1 * r-bigalgebra: new package at 0.8.4 * r-bigalgebra: new package at 0.8.4 with corrections * Added an additional change to tarball and dependencies * removing accidentally added file * Added tarball that uses mirror and removed redundant dependencies * Fixed version and added dep. * Updated checksum * Fixed urls * Added list_url Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-12SuperLU-Dist: Add CUDA variant (#19847)Pieter Ghysels1-2/+13
* Add CUDA support to superlu-dist * Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib so it works for both lib and lib64 The suggested: args.append('-DTPL_CUDA_LIBRARIES=' + spec['cuda'].libs.ld_flags) did not work because it does not link with cuBLAS.
2020-11-12Fix scalapack build error (#19824)Jean-Paul Pelteret1-3/+14
2020-11-12kokkos add "graviton" to spack_micro_arch_map (#19869)Satish Balay1-0/+2
* kokkos add "graviton" to spack_micro_arch_map * also add "graviton2"
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