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2016-11-14Merge pull request #1547 from citibeth/efischer/160816-PyPathspecbecker331-0/+41
py-pathspec: New package
2016-11-12Force the recipe for Lua to use the spack compiler. (#2299)Kelly Thompson1-2/+4
* Force the recipe for Lua to use the spack compiler. I'm not sure how the old recipe worked for anyone. The Lua Makefiles set `CC=gcc` and for my spack environment the first `gcc` found in my `PATH` is `$SPACK_ROOT/lib/spack/env/gcc`, which is a directory. This caused the build to fail. My change drops the `-std=gnu99`, but this option doesn't appear to be required for a sucessful build. * Preserve the '-std=gnu99' compile option.
2016-11-12Simplify the CMake build to make it more robust. (#2325)Elizabeth Fischer1-1/+1
* Simplify the CMake build to make it more robust. * ncurses on by default.
2016-11-12Remove automake dep in libelf. (#2328)Todd Gamblin1-1/+0
2016-11-10Add VizGlow package (#2298)Adam J. Stewart1-0/+58
2016-11-10Packages: Add Jansson (#2287)Axel Huebl1-0/+37
This adds the built recipe for [Jansson](http://www.digip.org/jansson/), *a C library for encoding, decoding and manipulating JSON data.* GitHub Repo: https://github.com/akheron/jansson Downstream Usage: In [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac) which is an *in situ visualization library* based on [alpaka](https://github.com/ComputationalRadiationPhysics/alpaka) and/or CUDA which is used in [PIConGPU](https://github.com/ComputationalRadiationPhysics/picongpu).
2016-11-10tree: use Spack's compiler and fix installation on macOS (#2293)Denis Davydov1-5/+22
2016-11-10Packages: Add libwebsockets (#2288)Axel Huebl1-0/+40
This adds the built recipe for [libwebsockets](https://libwebsockets.org/lws-api-doc-master/html/index.html), a *C library for lightweight websocket clients and servers*. GitHub Repo: https://github.com/warmcat/libwebsockets Downstream Usage: In [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac) which is an *in situ visualization library* based on [alpaka](https://github.com/ComputationalRadiationPhysics/alpaka) and/or CUDA which is used in [PIConGPU](https://github.com/ComputationalRadiationPhysics/picongpu).
2016-11-10Run HDF 5 tests post-installation (#2297)Adam J. Stewart1-2/+2
2016-11-09Update package.py with/out CUDA support (#2266)christianbaensch1-0/+12
Adding some lines to prevent from using any CUDA stuff, if NVIDIA CUDA Developement Kit was installed before.
2016-11-09zlib, tar: passed to AutotoolsPackage (#2273)Massimiliano Culpo2-17/+4
2016-11-09added numpy version 1.11.2 and moved url to pypi.io (#2286)Gregory Lee1-3/+3
2016-11-09Add py-pudb package (#2289)Oliver Breitwieser1-0/+44
2016-11-09Add 1.5.3 for py-matplotlib and moved to pypi.io (#2271)Oliver Breitwieser1-1/+2
* Added version 1.5.3 for py-matplotlib * Updated url to pypi.io so all versions are properly downloaded.
2016-11-08Updated environment-modules package: (#2279)Sergey Kosukhin1-8/+25
Added 'lib64' directory as a possible option where tclConfig.sh file can be found.
2016-11-08fix tau installation issue (#2269)Pramod Kumbhar1-1/+8
* fix tau installation issue : setup_environment() is called before install phase when 'Makefile.*' doesn't exist (causing list index out of range error). * Added detailed comment suggested by @alalazo
2016-11-07Merge pull request #2197 from skosukhin/ext_bugfixGregory Lee1-2/+2
Updated python package reflecting the changes in 9347f86
2016-11-06Further restrict versions of GCC patched (#2259)Adam J. Stewart1-1/+1
2016-11-05Add PFFT parallel FFT package (#2255)Michael Kuron4-0/+1799
* Add PFFT parallel FFT package * pfft: fix non-double precision
2016-11-05mpich: updated package to build_systems (#2254)Massimiliano Culpo1-33/+21
* mpich: updated package to build_systems * qa : flake8 issues
2016-11-04Add STAR-CCM+ package (#2202)Adam J. Stewart1-0/+78
* Add STAR-CCM+ package * Cleanup commented out code
2016-11-04Updated py-netcdf: added dependency on py-setuptools. (#2213)Sergey Kosukhin1-0/+1
2016-11-04New texlive release, updating the digest to match (#2218)George Hartzell1-2/+4
* November 1 seems to have brought a new texlive release, updating the digest to match. Also switching the url from their automagic mirror to an explicit site to avoid inconsistencies during their updates. It seems like only yesterday (#2073) that I updated this.... * Add comment to url warning about mirror updates Add a comment to the download info warning to use a specific site rather than the mirror, to avoid wobbles during their asynchronous updates. * Fix typo ('to no' -> 'do not')
2016-11-04libSplash: Add 1.6.0 Release (#2244)Axel Huebl1-0/+1
* libSplash: Add 1.6.0 Release Add the latest release of libSplash, version 1.6.0. * Fix flake8 checks (another loop inversion issue)
2016-11-04patch older config.guess for newer architectures (#2221)Gregory Lee10-75/+66
2016-11-04updates to matio package (#2243)Jeffrey Salmond1-6/+17
* updates to matio package - update to a AutoTools package - add variants for hdf5 and zlib - add latest version * fix flake8 error
2016-11-04opencoarrays package fixes and new version (#2239)Jeffrey Salmond1-9/+7
* fix and simplify opencoarrays package using new CMakePackge methods * add new version
2016-11-04tweaks to packages using CMakePackage (#2241)Jeffrey Salmond4-12/+5
* fix to trilinos package * fix to dealii package * fix to everytrace package * fix to everytrace-example package * changes suggested by @davydden
2016-11-04trilinos: switch to CMakePackage and minor cleanup (#2226)Denis Davydov1-31/+21
2016-11-04dealii: switch to CMakePackage and minor cleanup (#2237)Denis Davydov1-11/+6
2016-11-02Set TAU_MAKEFILE env variable (#2210)Pramod Kumbhar1-1/+6
* In order to use TAU module, we have to set TAU_MAKEFILE env variable. * updated with suggestions from @citibeth
2016-11-02Added first version of the NCL package. (#2195)Sergey Kosukhin2-0/+263
Without GRIB2 and HDF-EOS support yet.
2016-11-01Nmap package added (#2206)Peter Doak1-0/+37
* works to build newest version of nmap with gcc@5.3.0 * formatting * clean up
2016-11-01Updated python package reflecting the changes in 9347f86Sergey Kosukhin1-2/+2
2016-10-30python: PYTHONHOME may not be the same as the prefix of the python ↵Barry Smith1-2/+21
executable (#2173) On MacOS, brew installs /usr/local/bin/python but the Python prefix is not /usr/local/bin Use the python command sys.exec to get the correct directory, instead of the ad hoc self.prefix previously used This was a bear to debug; been driving me nuts since I started using spack. Since spack passes PYTHONHOME down to package builds in the environment it was passing PYTHONHOME of /usr/local/bin to the PETSc build that uses Python so the PETSc Python ./configure errored immediately with ImportError: No module named site since python could find no python modules. Todd Gamblin pointed out that my first try to fix this was wrong since it assumed the spack python was the same python used to run spack. Elizabeth Fischer suggested how to get it to work also with python3 Funded-by: IDEAS Project: IDEAS/xSDK Time: 7 hours Thanks-to: Todd Gamblin, Elizabeth Fischer
2016-10-30updated gtk and gobject dependences (#2126)Gregory Lee2-0/+3
2016-10-29Update license directory for intel-paralel-studio (#2163)Adam J. Stewart1-6/+15
2016-10-28Update and Clean Up the Visit and VTK Packages (#2167)Joseph Ciurej2-62/+69
* Made some refactoring improvements to the 'visit' and 'vtk' packages. * Added a small fix for the 'vtk' package when building with 'qt+webkit'.
2016-10-27Add latest version of Intel Parallel Studio XE (#2151)Adam J. Stewart1-15/+47
2016-10-26Get Trilinos 12.6.2 to build with Intel compilers and spack (#2102)Barry Smith1-8/+17
Funded-by: IDEAS Project: IDEAS/xSDK Time: 2 hours
2016-10-26libSplash: Add 1.5.0 Release (#2137)Axel Huebl1-0/+1
Add the latest release of libSplash, version 1.5.0.
2016-10-26require fortran for MPI providers to avoid delayed compiler errors (#1937)Denis Davydov3-18/+21
* openmpi: require fortran for now * mpich: requre fortran for now * mvapich2: require fortran for now * openmpi: flake8 fixes
2016-10-26Develop: Resolve issue 2070 with new depends_on clause in the openspeedshop ↵Jim Galarowicz1-1/+1
package file. (#2136) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file.
2016-10-26add a unit test for conretization with develop version (#2064)Denis Davydov1-0/+37
2016-10-26veclibfort: add new package (#2080)Denis Davydov1-0/+70
* veclibfort: add new package * veclibfort: add a small test
2016-10-25Add package for ant (#2133)George Hartzell1-0/+44
Add a package for ant, a java build tool.
2016-10-25Add package for maven (#2132)George Hartzell1-0/+41
Add a package that installed the pre-built maven distribution. I've given up, for now, on building maven from source. That processed stumbled on two points before I gave up: 1. It downloaded several hundred .{pop,jar} files and I despaired of figuring out some way of mirroring and checksumming them; and 2. It exploded complaining about too many unacceptable license files, which seems odd in its own source tree. Perhaps someone with more Java fu that I admit to can figure it out. In the meantime, this is useful.
2016-10-25openblas: Fixes to get OpenBLAS to install with Intel compilers (#2101)Barry Smith2-0/+258
Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-10-25Add latest versions of Flux prerequisites (#2108)Stephen Herbein2-1/+11
* libsodium: add latest versions, fix old versions older versions of libsodium were added to an "old" subdirectory * zeromq: add 4.1.4 prerequiste for the latest develop version of flux
2016-10-25pkg-config variant to use internal glib (#2104)Mayeul d'Avezac2-8/+12
Pkg-config depends on glib which depends on pkg-config. As a result, pkg-config used to build glib internally. However, this fails on Mac. Building pkg-config with an internal glib is now a variant, turned on by default, and required to build glib.
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