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2018-01-20qt@4 : update corewlan patch for OS X 10.1[23] (#6943)Geoffrey Oxberry1-5/+5
Update the qt4 CoreWLAN patch to apply to macOS/OS X 10.12 and 10.13, which both still use the CoreWLAN framework in their SDKs (although it's apparently deprecated?!). Without this patch update, `spack install qt@4.8.6` fails on macOS/OS X 10.12 because the linker cannot find headers from the CoreWLAN framework.
2018-01-19vtk@:6.1.0 : disable Obj-C gc for XCode >= 5.1Geoffrey Malcolm Oxberry1-0/+12
Apple removed support for Objective-C garbage collection in binaries in XCode 5.1, but VTK 6.1.0 and earlier set flags for garbage collection, resulting in a compile-time bug when compiling VTK using any recent version of XCode (i.e., Apple Clang). This commit fixes this bug by removing the garbage collection flags via setting the variable `VTK_REQUIRED_OBJCXX_FLAGS` to the empty string. This variable has the same value (i.e., the empty string) in the root-level CMakeLists.txt file for VTK 6.2.0 and later.
2018-01-19vtk@:6.1.0 : fix NetCDF C++ bindings detectionGeoffrey Malcolm Oxberry1-0/+11
VTK 6.1.0 and earlier do not use paths stored in `NETCDF_CXX_ROOT` to detect the presence of NetCDF C++ headers and libraries. Consequently, VTK 6.1.0 does not build. This commit fixes this bug by setting the advanced variables `NETCDF_CXX_INCLUDE_DIR` and `NETCDF_CXX_LIBRARY` at the command line to specify the directory containing headers and the full library path for the NetCDF C++ bindings.
2018-01-19miniqmc: initial commit (#6991)Christoph Junghans1-0/+52
2018-01-18Fix type issues with setting flag handlers (#6960)becker331-3/+8
The flag_handlers method was being set as a bound method, but when reset in the package.py file it was being set as an unbound method (all python2 issues). This gets the underlying function information, which is the same in either case. The bug was uncovered for parmetis in #6858. This is a partial fix. Included are changes to the parmetis package.py file to make use of flag_handlers.
2018-01-18ucx: update for release 1.2.2 (#6990)Howard Pritchard1-0/+4
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-01-18ipopt package: set compiler flags in configure (#6714)junkudo1-11/+13
This makes use of the new flag_handler logic from 28d8784a to set compiler flags for ipopt by passing them as arguments to the build system rather than injecting them into the compiler wrappers. This avoids conflicts between flags that are chosen by the build system and flags that are set by the user.
2018-01-15Add url_for_version to pango package (#6939)Adam J. Stewart1-0/+4
2018-01-15ipopt: add version 3.12.8, relax metis version requirements (#6936)Geoffrey Oxberry1-1/+2
* ipopt: add version 3.12.8 * ipopt: allow linking with metis 5
2018-01-15ruby: fix +openssl & +readline variants (#6935)Geoffrey Oxberry1-3/+32
* ruby: fix +openssl & +readline variants Fix "unqualified variable spec['openssl']" error in the ruby package that arises when trying to install the `+openssl` variant by referencing the `spec` field in the `Ruby` class. A similar error arises when trying to install the `+readline` variant; this error is also fixed by this patch. * ruby: make +openssl variant default to on Ruby's gem command will fetch gems from HTTPS resources by default (e.g., gem install bundler). Without openssl, request to fetch gems bounce back with the error ``` ERROR: While executing gem ... (Gem::Exception) Unable to require openssl, install OpenSSL and rebuild ruby (preferred) or use non-HTTPS sources ``` Without the ability to install gems -- required for some spack packages -- the ruby installation has limited utility for many users. * ruby: update rubygems ssl cert to fix ssl errors The SSL certificate bundled with Ruby 2.2.0 is outdated, so e.g., `gem install erubis` will fail with an SSL certificate error. This commit installs the updated SSL certificate to the proper directory so that gems can be downloaded and installed from RubyGems.
2018-01-15Reworked the graphviz package (#6865)Federico Ficarelli1-27/+61
The url in graphviz has been fixed and its version has been updated to the latest available (2.40.1). Added variants for expat, qt, gtk+ and ghostscript.
2018-01-14Py-fparser: python parser for Fortran code (#6794)Milton Woods1-0/+55
* py-fparser: parser for Fortran 77..2003 code * py-fparser: guard against external pytest.ini * py-fparser: define 'develop' version as latest master branch * py-fparser: fetch tagged versions from git repo * py-fparser: add latest release 0.0.6 * py-fparser: whitespace adjustments for flake8 * py-fparser: inherit python dependency from PythonPackage * py-fparser: rely on spack to resolve sub-dependencies * py-fparser: try type='test' for py-pytest * py-fparser: fetch release tarballs instead of git commits * py-fparser: test deptype is available, remove comment * py-fparser: limit versions that use py-six * py-fparser: version ranges do not need a lower bound
2018-01-14r-rappdirs: Create new package. (#6891)lingnanyuan1-0/+39
* r-rappdirs: Create new package. * r-rappdirs: Add version constraints.
2018-01-14Qt fixes for RHEL6/7 (#6895)Milton Woods4-38/+69
* qt: move licence acceptance from qt3krell.patch to qt3accept.patch * qt: ensure that ptrdiff_t is defined for qt@3.3.8b * qt: disable webglplugin for qt@5.10~opengl * qt: depend on libxext (for qt@3 and @4) * qt: avoid X dependencies on darwin platforms * Revert "qt: avoid X dependencies on darwin platforms" This reverts commit 05ce08de94be1e02d7e2f2dae0c1ae59baa3f65a. * qt: limit range of versions depending on libxext
2018-01-14Fix installation of bash-completion (#6911)healther1-0/+4
* Fix installation of bash-completion * use run_before decorator instead of overriding install method
2018-01-14Update py-backports-functools-lru-cache to 1.4 (#6915)healther1-4/+5
* Update py-backports-functools-lru-cache to 1.4 * fix old url
2018-01-14make vim python3 compatible (#6925)healther1-2/+7
2018-01-14Updated catch to newer version (up to 2.1.0) (#6933)David Pérez-Suárez1-20/+28
Also updated all the sums from previous versions
2018-01-14Add version 1.81 of cppcheck (#6912)healther1-0/+1
2018-01-13Catalyst package (#6834)Simone Bnà1-0/+167
* catalyst: added catalyst package * catalyst: missing libx11 and libxt dependencies * catalyst: added std cmake args * catalyst: override paraview git describe cmake variable * catalyst: fixed flake8 errors
2018-01-13Do not construct path to perl command manually (#6927)Michael Kuhn5-10/+8
Instead, use spec['perl'].command.path.
2018-01-13Add PyNN 0.9.1 (#6926)healther1-1/+4
2018-01-13Update checksum for version 0.5.3 of yaml-cpp (#6924)healther1-1/+1
2018-01-13Add py-pyflakes versions up to 1.6.0 (#6923)healther1-0/+3
2018-01-13Add py-pycodestyle versions up to 2.3.1 (#6922)healther1-0/+4
2018-01-13Update py-neo to 0.5.2 (#6921)healther1-0/+1
2018-01-13Add py-mccabe versions up to 0.6.1 (#6920)healther1-0/+3
2018-01-13add version 1.26 to py-git-review and fix run_env (#6919)healther1-1/+2
* Update py-git-review to version 1.26.0 * Fix py-git-review package TypeError: object of type 'Version' has no len()
2018-01-13Update py-flake8 to 3.5.0 (#6918)healther1-0/+7
2018-01-13py-doxypy conflicts python3 (#6916)healther1-0/+2
* py-doxypy conflicts python3 * change conflicts to depends_on
2018-01-13Update py-autopep8 to 1.3.3 (#6914)healther1-1/+3
* Update py-autopep8 to 1.3.3 * Update package.py
2018-01-13glib: Fix python handling (#6910)Michael Kuhn1-5/+26
Newer versions of glib require python. Fix up the python sbangs the same way we already fix up the perl ones. Fixes #6899
2018-01-13add patch for gccxml with gcc@5: (#6913)healther2-0/+59
2018-01-13Update py-elephant to 0.4.1 (#6917)healther1-0/+1
2018-01-12Handle test dependencies that are python extensions (#6904)scheibelp1-1/+1
See #6794 This fixes cases where test-only dependencies were omitted from consideration when modifying the environment at build time. This includes an update to the python package definition to add testing-related python extensions to its specialized environment setup.
2018-01-12coinhsl: add version 2014.01.10 (#6909)Geoffrey Oxberry1-0/+15
* coinhsl: add version 2014.01.10 (stable) * coinhsl: make 2014.01.10 preferred version Make Harwell Subroutines Library for IPOPT version 2014.01.10 the preferred version because it is the latest stable version released. * coinhsl: add option to link w/ BLAS libraries
2018-01-12A new package: ethminer. (#6908)健美猫1-0/+54
2018-01-11libbson, libmongoc: Update to 1.9.1 (#6900)Michael Kuhn2-0/+6
2018-01-11Updated misc devel tools. (#6897)stefanosoffia7-1/+8
2018-01-11fix ips 2018 vtune directory name (#6893)Gregory Lee1-1/+4
2018-01-10r-biocstyle: Create new package. (#6503)lingnanyuan1-0/+41
* r-biocstyle: Create new package. * r-biocstyle: add version constraints.
2018-01-10r-bookdown: Create new package. (#6504)lingnanyuan1-0/+41
* r-bookdown: Create new package. * r-bookdown: add version constraints.
2018-01-10r-rprojroot: Create new package. (#6505)lingnanyuan1-0/+40
* r-rprojroot: Create new package. * r-rprojroot: add version constraints. * r-rprojroot: Add list_url.
2018-01-10r-rmarkdown: Update version to 1.7 (#6506)lingnanyuan1-5/+9
* r-rmarkdown: Update version to 1.7 * r-rmarkdown: add version constraints.
2018-01-10discovardenovo: adding new package (#6888)snehring1-0/+45
2018-01-10package libharu: Add build deps (#6883)jkelling1-0/+3
... libtool,autoconf,automake
2018-01-10Updated i3 dependencies. (#6885)stefanosoffia7-0/+7
2018-01-10Geant4: fix qt dependency (#6828)Adam J. Stewart1-2/+2
2018-01-10Older versions of libiconv don't work with newer versions of GCC (#6829)Adam J. Stewart1-0/+2
2018-01-10opa-psm2: new package (#6874)Levi Baber1-0/+54
* opa-psm2: new package * opa-psm2: installs now. think the module file needs work * opa-psm2: module file seems good now * opa-psm2: remove fixme * opa-psm2: flake8 fixes * opa-psm2: removing unnecessary make in install phase