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2017-06-21mumps: fixed compilation issues due to scotch not found at link time (#4567)Massimiliano Culpo4-7/+38
2017-06-21refactor openfoam packages (#3669)Mark Olesen14-756/+1315
* Several improvements for the openfoam packages -- Refactor openfoam packages by adding an OpenfoamArch class Use separate configure, build, install phases. Provide FOAM_PROJECT_DIR dependent env for openfoam packages - easier way to locate Eliminate intermediate installation directories - unneeded clutter. - makes it less than easy to find the etc/bashrc file Add versioning for all openfoam patches - no certainty which parts (if any) will be needed in future versions, especially if we strive to ensure that the upstream version builds well with spack to begin with. Support build of develop branches - helps track build regressions for future openfoam releases STYLE: use common/ and assets/ to provide additional (build) resources ... * - adjust OpenFOAM provider Move openfoam-com up front since this is the one being used as a base for the others
2017-06-21Andi and libdivsufsort (#4559)Audrey Thoma2-0/+77
* andi: adding andi and libdivsufsort * andi: adding andi and dependency libdivsufsort * andi: adding andi and dependency libdivsufsort * andi: fixing autotool dependency types * andi: fixed whitespace to make flake8 compliant
2017-06-21Modified ipopt package to support build on ppc64le (#4561)Jonathan Wong2-0/+28
Added line in package.py to patch using ipopt_ppc_build.patch. The patch simply adds support in config.guess and Ipopt/config.guess to build ipopt on ppc64le.
2017-06-21adding H5Z-ZFP; updating zfp to use choice variant for bit stream word size ↵Mark C. Miller2-8/+77
(#4466) * adding H5Z-ZFP; updating zfp to use choice variant for bit stream word size * fixing homepage url * removed fortran error message...just build fortran if can, otherwise ignore
2017-06-21Fix for SAMRAI build debug spec bug (#4564) (#4565)Jim Eliot1-1/+1
2017-06-20FFTW: remove search for IBM XL threaded compiler when compiler is not gcc ↵serbanmaerean2-0/+122
(#4187) * Added magma package * Incorporated Serban's change * fftw: patch configuration file to remove search for xlc_r compiler when compiler not gcc FFTW assumes there are only 2 compilers: gcc and IBM XL. When building threaded fftw, the configuration file is looking for the threaded IBM XL's xlc_r compiler when the compiler is not gcc. The PGI compiler is not gcc.
2017-06-20Add abyss package (#4555)Audrey Thoma1-0/+54
* abyss * abyss: deleting attemped test from script * abyss: adding new package abyss * abyss: partially fixing mpi dependency issue * abyss: added mpi provider conflicts
2017-06-20Features/votca (#4556)Christoph Junghans3-2/+109
* votca-csg: needs non-mpi version of gromacs * votca-csg: fixed deps * votca-moo: new package * votca-ctp: new package * votca-ctp: make flake8 happy
2017-06-20fontconfig should depend on gperf (#4551)George Hartzell1-0/+1
* Include depends_on for gperf Sometime around 2.12.2 fontconfig acquired a build-time dependency on `gperf` (this commit, I think: 59fd9960bbb58fd6257adb13ec0f918882149332). This adds the dependency. `gperf` is called in the `src/Makefile`, see line 907 of `src/Makefile.in`. * Only depend_on gperf if @2.12.2: The gperf dependency *seems* to only be required when @2.12.2:. Earlier releases do not check the arg type of the gperf lookup function (which requires gperf) and are able to use pre-generated files so gperf is not required at build time.
2017-06-20Fix veclibfort for gcc (#4548)Mark C. Miller1-2/+10
* fixes #967 * Version bump to 0.9.1 - Bugfixes for spack find - 0.9.1 can read specs from current develop. * Don't assume spack is in the path when building docs. * fixing Makefile override of PREFIX and install w/gcc-6
2017-06-19added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile (#4534)Stas Sergienko5-0/+203
* added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile * fixed https in homepage of py-dxfile
2017-06-19Various updates to wget and dependencies (#4116)Adam J. Stewart4-39/+162
* Various updates to wget and dependencies * Add newer version of gnutls
2017-06-19Overhaul CONVERGE installation and concretization (#4397)Adam J. Stewart4-14/+178
2017-06-19fontconfig: Update to latest stable release (#4543)Diana Bite1-1/+2
2017-06-17votca-csg: fixing develop url (#4536)Andrey Prokopenko1-1/+1
Fix #4525.
2017-06-16Added py-pybtex package (#4507)Stas Sergienko1-0/+41
* Added py-pybtex package * added more dependencies to py-pybtex * added run to py-latexcodec dependency
2017-06-16Py ase (#4517)John Roberts1-0/+39
* py-ase: Adding python package py-ase. * py-ase: Adding Python package py-ase. * py-ase: Shortened package description. * py-ase: Splitting package description to multiple lines to avoid char count max. * py-ase: Removing trailing whitespace. Local flake8 tests passed now that flake8 is working for me.
2017-06-16added py-sphinxcontrib-bibtex and py-pybtex-docutils packages (#4520)Stas Sergienko2-0/+82
* added py-sphinxcontrib-bibtex and py-pybtex-docutils packages * added dpendency py-ordereddict
2017-06-16Update intel* packages (#4528)Kyle Fernandes, né Jacobs6-2/+24
* Update intel-* packages * Update intel package
2017-06-16Update Scalasca/Score-P/Cube/OTF2 (#4485)David Böhme3-30/+31
* Update Scalasca/Score-P/OTF2/Cube. Should fix #4349# * cube: Fix flake8 warnings * cube, scalasca: Fix version range syntax for deps * otf2: Fix version URL generation * cube: Remove static URLs
2017-06-16Fix OpenMPI CUDA support (#4323)Adam J. Stewart1-2/+20
* Fix OpenMPI CUDA support * Remove --with-cuda-libdir flag, not a real flag * Fix PGI and CUDA 7 support
2017-06-16py-pillow: ensure that RPATH includes graphics libraries (#4522)Milton Woods1-1/+3
2017-06-16oce changes for cgm (#4514)iulian7872-18/+31
* oce changes for cgm cgm can be configured with oce, but oce needs to have X11 enabled, because some libraries (like TKCAF in occ/oce) gets built only of X11 is NOT disabled so introduce a variant +X11 for oce, which is needed when configuring cgm with oce(+X11) * follow up review simplify by removing the patch and different url paths use append instead of extend, when necessary make mpi true by default X11 dependency is still to be addressed; it pulls in some opengl library (on laptop nvidia seem to work, on virtual linux machine mesa was good enough)
2017-06-15Added package py-oset (#4500)Stas Sergienko1-0/+37
* Added py-oset package * Added package py-oset * changed homepage url
2017-06-15added py-latexcodec package (#4509)Stas Sergienko1-0/+37
* Added py-latexcodec package * removed url line from the file
2017-06-15added py-counter package (#4510)Stas Sergienko1-0/+37
2017-06-15openblas: Fix build on aarch64. (#4487)Diana Bite1-1/+8
- invoke make with the correct TARGET for aarch64 - foforce PILERDRIVER as openblas cannot correctly detect CPU on aarch64 - update url to more recent version
2017-06-15Add latest version of JDK (#4317)Adam J. Stewart1-10/+15
* Add latest version of JDK * Use a more specific URL to get curl to work * Remove failing unit test
2017-06-15Add missing doc variant to fenics package (#4473)Adam J. Stewart1-15/+22
2017-06-15Adding initial AMReX package (#4467)Mark C. Miller1-0/+85
* adding initial amrex package * adding missing fortran variant predicate * adjusting description text * adjusting as per @tgamlin guidance
2017-06-15Added py-pywavelets package (#4496)Stas Sergienko1-0/+42
* Added py-pywt package * passes flake8 test * renamed py-pywt to py-pywavelets
2017-06-15Nalu requires Trilinos with Exodus support (#4505)Jon Rood1-1/+1
* Disabling Exodus in Trilinos by default. * Returning default of Exodus to true in Trilinos.
2017-06-15Prefer vim to vi for default editor (#4230)Adam J. Stewart3-3/+3
* vim > vi * Allow which to accept multiple args * Update __init__ to use which with multiple args * Fix doc tests
2017-06-14Add h5utils package (#4506)Adam J. Stewart2-0/+115
2017-06-14Fix tpetra-related xsdk errors (#4501)Alicia Klinvex1-2/+2
* Fix tpetra-related xsdk errors Recent changes to the trilinos package broke the xsdk build. xSDK explicitly disables tpetra, but packages depending on it (such as ifpack2 and amesos2) are explicitly enabled by default in the trilinos package. This commit explicitly disables them within the xsdk package.py. * Disabled exodus in the xsdk build See issue #4502 for details
2017-06-14fix intltool_sbang issue #4191 (#4192)Luigi Calori1-1/+2
* fix intltool_sbang issue #4191 * add per dep even if already depending on perl-xml-parser * adding more comment, properly spaced
2017-06-14Improve qt (#4309)Michael Kuhn1-2/+10
- Introduce an opengl variant that is enabled by default. Disabling it allows building qt for X forwarding etc. - Depend on fontconfig and freetype to make use of system fonts. Otherwise qt can not find any fonts. - libx11 is required when libxcb is used. - Set MAKEFLAGS to parallelize qmake compilation.
2017-06-14Adding package namd (#4321)Nicolas Richart3-11/+183
* Initial version of the namd package * Modified charm to consider compile against intel/intel-mpi * Correction of namd to compile with intel-mkl and intel compiler * Adding inclue64 in the prefix * adding property for the build directory * removing useless function build
2017-06-14Updates rose definition (#4411)Josh Asplund4-16/+151
* Adds z3 package * Adds binwalk package * Updates spot package definition * Updates rose package definition * Modifications for code review * Fixes string formatting * Remove python version requirement
2017-06-14Added new package for py-rsa (#4494)Adam J. Stewart1-0/+39
2017-06-14superlu-dist: don't use '_' symbols from BLAS for IBM XL compiler (#4486)serbanmaerean1-1/+3
2017-06-13ipopt 3.12.7 (#4490)Geoffrey Oxberry1-0/+20
* ipopt: update version to 3.12.7 * ipopt: add +coinhsl option * ipopt: add +metis option
2017-06-13coinhsl 2014.01.17: new package (#4482)Geoffrey Oxberry1-0/+47
2017-06-13metis: bugfix: make shared library build portable (#4489)Geoffrey Oxberry1-1/+2
Fixes #4488. When compiling metis as a shared library, the package used the syntax `-rpath=`, followed by a path. This syntax is non-portable, so replace it using Spack's compiler rpath argument property.
2017-06-13visit: Added VisIt version 2.12.2 (#4495)John Roberts1-0/+1
2017-06-13Override partial installs by default - part three (#4331)scheibelp1-0/+43
* During install, remove prior unfinished installs If a user performs an installation which fails, in some cases the install prefix is still present, and the stage path may also be present. With this commit, unless the user specifies '--keep-prefix', installs are guaranteed to begin with a clean slate. The database is used to decide whether an install finished, since a database record is not added until the end of the install process. * test updates * repair_partial uses keep_prefix and keep_stage * use of mock stage object to ensure that stage is destroyed when it should be destroyed (and otherwise not) * add --restage option to 'install' command; when this option is not set, the default is to reuse a stage if it is found.
2017-06-13espresso: fixed compilation for 6.1 (elpa) and added support for hdf5 (#4483)Massimiliano Culpo3-43/+113
* espresso: fixed compilation for 6.1 (elpa) and added support for hdf5 * espresso: addressed items in @davydden review * espresso: fixed behavior for espresso@:5.4.0
2017-06-13Fix/mumps (#4453)serbanmaerean3-3/+84
* Added magma package * Incorporated Serban's change * mumps: Fix compiler error with IBM XL Split the patching between v 5.0.2 and 5.1.1
2017-06-13Fix building shared libraries for gmp (#4464)Michael Kuhn1-0/+7
If specific compiler flags are set, gmp will not build a shared library, causing failures further down the line.