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2016-10-25spack setup : fixed regression after #1186 (#2117)Massimiliano Culpo1-13/+7
2016-10-25gmp: fix a bug (#2114)Denis Davydov1-1/+1
2016-10-24Merge pull request #1186 from epfl-scitas/features/install_with_phasesTodd Gamblin11-131/+75
do_install : allow for an arbitrary number of phases
2016-10-24Rename EditableMakefile to MakefilePackageTodd Gamblin1-1/+1
2016-10-24Get netlib-lapack to compile with Intel and add deprecated routines (#2103)Barry Smith1-1/+11
Funded-by: IDEAS Project: IDEAS/xSDK Time: .4 hours
2016-10-24Adds new versions to eigen (#2105)Mayeul d'Avezac1-3/+5
* Adds new versions to eigen * Reorder versions from oldest to newest
2016-10-23package.py : moved each specialized package to its own module filealalazo1-2/+2
2016-10-23CMakePackage, AutotoolsPackage : added default behavior on checkalalazo3-8/+2
2016-10-23Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo36-8385/+423
features/install_with_phases_rebase
2016-10-22mumps: Add support for Intel compiler and insure both lapack and blas… (#2076)Barry Smith1-3/+11
* mumps: Add support for Intel compiler and insure both lapack and blas libraries are passed to the examples Likely it was not discoverged before that the examples require both lapack and blas libraries because it was tested with Openblas which is one large library containing everything. Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours * flake8 fix.
2016-10-22Add Package : OpenSceneGraph (#2075)Joseph Ciurej1-0/+77
* Created the initial version of the 'OpenSceneGraph' package. * Added 'zlib' as a dependency and linked it during the build step. * Fixed a few minor PEP8 style violations in the 'OpenSceneGraph' package. * Added cmake as a build dependency and improved the build procedure. * Made a few important argument updates to improve package compatibility. * Fixed up a few remaining style issues in the 'openscenegraph' package. * Added a description for the 'openscenegraph' package. * Fixed a bug that was causing some 'openscenegraph@3.2.3%gcc' installs to fail. * Fixed a number of small issues with the 'openscenegraph' package. * Removed a number of superfluous flags from the 'openscenegraph' install.
2016-10-22Add new package "gource" and dependencies "glew, sdl, sdl-image". (#2084)Jean-Paul Pelteret4-0/+202
2016-10-21Updated the texlive digest value (#2073)George Hartzell1-1/+1
The texlive tarball, install-tl-unx.tar.gz is unversioned and changes periodically. When it does, the digest needs to change too. This does that.
2016-10-22packages : moved decorators into AutotoolsPackage and CMakePackagealalazo4-16/+3
2016-10-21Update Package : Qt (Add 'WebKit' Support) (#1455)Joseph Ciurej1-29/+43
* Added the '+webkit' variant to the 'qt' package. * Made 'qmake' an available executable to 'qt' depdendents.
2016-10-21Extend concretization test to excercise bug in concretize's provider sortingMatthew LeGendre2-1/+40
2016-10-21Add new Version property to handle joined version numbers (#2062)Adam J. Stewart6-22/+21
* Add new version property to handle joined version numbers * Add unit test for new joined property * Add documentation on version.up_to() and version.joined
2016-10-21Add latest version of Armadillo (#2061)Adam J. Stewart1-0/+1
2016-10-21patch directive : fixed retrieval from urls ( fixes #1584 ) (#2039)Massimiliano Culpo19-8329/+27
* patch directive : fixed retrieval from urls fixes #1584 - add support for 'gz' archives - fixed bugs with URL patches - updated nwchem * patch directive : added checksum to UrlPatch - refactored classes in patch.py - updated nwchem * patch directive : added caching
2016-10-21Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo306-648/+14771
features/install_with_phases_rebase Conflicts: lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py
2016-10-19Fixes needed to build gcc on Linux/ppc64le (#2057)Matthew LeGendre3-1/+1191
* Fixes needed to build gcc on Linux/ppc64le * flake8 fix.
2016-10-19Fix cdd package definition, dotted is a property (#2054)George Hartzell1-1/+1
Things that accessed the cdd package, such as `spack info cdd run tripped over a buglet in the *cdd* package, causing them to exit with something like this: ``` Caused by: TypeError: 'str' object is not callable File "/rss/spack/lib/spack/spack/repository.py", line 584, in get self._instances[key] = package_class(copy) File "/rss/spack/lib/spack/spack/package.py", line 398, in __init__ f = fs.for_package_version(self, self.version) File "/rss/spack/lib/spack/spack/fetch_strategy.py", line 852, in for_package_version attrs['url'] = pkg.url_for_version(version) File "/rss/spack/var/spack/repos/builtin/packages/cdd/package.py", line 40, in url_for_version str(version.dotted()).replace('.', '')) ``` @tgamblin pointed out that `dotted` is a property, not a functin call and that the parentheses are therefor inappropriate. This deletes the parentheses. `spack info cdd` now works for me.
2016-10-19Add package for htop (#2051)George Hartzell1-0/+41
Add package for htop, an interactive text-mode process viewer for Unix systems. Think top, with pretty colors and dyanmic bar graphs. More info [here](https://github.com/hishamhm/htop).
2016-10-18petsc: minor fixes... (#2036)Denis Davydov1-2/+4
* petsc: require boost for :3.5 only * petsc: turn off download for c2html and hwloc
2016-10-18Support for bazel (#2023)Eric4-0/+369
* Add package bazel * Add support for bazel-based builds
2016-10-18superlu-dist: add 5.1.0 and 5.1.1 (#2038)Denis Davydov1-0/+2
2016-10-18mumps: add 5.0.2 (#2041)Denis Davydov1-0/+1
2016-10-18hypre: add 2.11.1 (#2040)Denis Davydov1-0/+1
2016-10-17Update the Krell Institute products to use the latest features of spa… (#1984)Jim Galarowicz6-316/+253
* Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies.
2016-10-17fix download url for paraver (#2033)Pramod Kumbhar1-2/+4
* fix download url for paraver * added note to remove older version
2016-10-15fix sqlite download url (#2031)Pramod Kumbhar1-1/+1
2016-10-14Workaround for illegal package merging in py-matplotlib/py-basemap (#1964)Elizabeth Fischer1-1/+75
* Workaround for illegal package merging in py-matplotlib/py-basemap # Conflicts: # var/spack/repos/builtin/packages/py-basemap/package.py * flake8 * flake8 * Be conservative: only apply the namespace package fix for Python >= 3.5.2 * flake8 * Bug fix
2016-10-14Fix list_url for fish shell (#2022)Adam J. Stewart1-2/+1
2016-10-14py-macs2: New package (#2011)John Finigan1-0/+46
* py-macs2: New package * py-macs2: add py-numpy@1.6: dependency
2016-10-14Add missing 'import os'. (#2012)Kelly Thompson1-0/+1
2016-10-14dealii: remove extra test which are now mostly integrated in make test (#2013)Denis Davydov1-113/+0
2016-10-14Package/petsc slepc new versions (#2019)Denis Davydov2-0/+2
* petsc: add 3.7.4 * slepc: add 3.7.3
2016-10-12py-matplotlib: Add variants for optional dependencies. (#2008)Elizabeth Fischer1-21/+42
2016-10-12Made optional CGAL dependencies optional. (#2006)Elizabeth Fischer1-17/+34
* Made optional CGAL dependencies optional. * cgal: Added note explaining that the CORE library is not the same as core CGAL functionality. * Bug fix and flake8 * flake8
2016-10-12Mock up Xcode devdir to make Qt5 work on Mac OS X (#1832)Ben Boeckel2-2/+2
* build_environment: allow compilers to set up an environment * clang: mock up a toolchain directory for xcode Some projects ignore CC and CXX flags and instead use xcode to find the toolchain. Clang on Apple should set up the environment properly. Arguably, every compiler could do this on Apple, but let's see how this works out just for AppleClang for now. The Documentation directory is ~1.7G and the excluded platforms add up to about 7G. Ignoring swift saves another 500M. The resulting Xcode.app copy is in the 2G range. * compiler: set member variables early This is required so that later methods can query things such as the version of the compiler. * compiler: support finding the real path of the compiler On Apple, the /usr/bin compilers are actually wrapping tools themselves which query xcrun for the currently selected Xcode installation. Pierce this veil and get the real, full path the to underlying compilers instead. * icu4c: install with rpath On macOS, icu installs with a library ID of the library name. Enabling rpath makes its ID its full installed path which lets Qt5 link against it successfully. * qt: no -no-gtkstyle flag on Qt5 on macOS
2016-10-11Make `insecure` option work with curl AND git. (#1786)Todd Gamblin1-20/+6
2016-10-11patchelf: Add version (#1540)Elizabeth Fischer1-1/+3
* patchelf: Add version * flake8 * Removed unnecessary url_for_version() function. * Restored old URL
2016-10-11oce: fix for Sierra (#1934)Denis Davydov2-0/+50
2016-10-11Abinit: Added package(s) (#1995)gmatteo4-0/+306
* First version of Abinit package * Ignore *.swp files * Add libxc, etsf_io packages * AtomPaw package * Make Abinit depend on mpi@2: and external version of libxc, netcdf, hdf5, etsf_io * etsf_io: install Fortran modules in prefix.include * Remove etsf_io from abinit requirements * Add libxc2.2.1 (required by Abinit and atompaw) * Cleanup * Run make check * Cleanup * Use ld_flags instead of hard-coded libs, fix pep8, add copyright * Put scalapack before lapackblas
2016-10-11Update Package : ExodusII (#1504)Joseph Ciurej4-41/+66
* Added support for the 'maxdims' and 'maxvars' flags for 'NetCDF'. * Added the '+mpi' variant and improved dependencies for 'exodusii'. Improved the 'exodusii' package so that it's less reliant on patches. * Added better type checking to variant values in the 'netcdf' package. * Corrected the required CMake version for the 'exodusii' package. * Fixed the dependencies of the '+mpi' variant of the 'exodusii' package.
2016-10-11Package all of Xorg/X11/XCB (#1740)Adam J. Stewart263-108/+12270
* Updates to Mesa and other Xorg packages * Add packages for all Xorg Protocol extensions * Add packages for first half of Xorg libraries * Add packages for remaining Xorg libraries * Add packages for all Xorg utilities * Add packages for Xorg documentation tools * Add build deps to Xorg protocol headers * Add packages for XCB * Add build deps to Xorg libraries * Add build deps to Xorg utilities * Add packages for Xorg fonts and font-related utilities * Change font deptype from build to default I wasn't sure which deptype was appropriate at first since none of the packages are actually linked together. I initially chose the build deptype for this reason. However, the font packages don't install into their own prefix. They install into font-config. If font-config is a build dependency, that means you can uninstall it without uninstalling the font packages, which wouldn't make sense since they install into font-config. So I switched them back to the default deptype. * Minor formatting changes to ncview * Add half-way done xorg-server package * Add packages for Xorg test suites, not yet tested! * Add packages for Xorg data * Add first quarter of Xorg apps * Add more packages for Xorg apps * Add dependencies to mesa * Remove comments from mesa package * Flake8 * Add more packages for Xorg apps * Add more packages for Xorg apps * Add more packages for Xorg apps * Add more packages for Xorg apps * Add more packages for Xorg apps * Add package for Sublime Text * Add packages for remaining Xorg apps * Revisit testing packages, add missing dependencies * Add dependencies, clean up FIXMEs
2016-10-11qa : flake8 issuesalalazo1-1/+1
2016-10-11Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo138-259/+1329
features/install_with_phases_rebase Conflicts: lib/spack/spack/build_environment.py lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py lib/spack/spack/package.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/hdf5/package.py
2016-10-11hypre: fix blas/lapack for MKL (#1993)Denis Davydov1-2/+2
2016-10-11Merge pull request #1989 from KineticTheory/cray_compile_wrappersTodd Gamblin1-4/+12
On Cray machines, use the Cray compile wrappers instead of MPI wrappers.
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