summaryrefslogtreecommitdiff
path: root/var
AgeCommit message (Collapse)AuthorFilesLines
2017-08-01Fix xsdk build broken by petsc and trilinos (#4893)Alicia Klinvex2-3/+3
* Fix xsdk build broken by petsc and trilinos See #4891 for details * Fix version conflict in trilinos package Trilinos version 11 may conflict with superlu-dist. The version "xsdk-0.2.0" was conflicting with superlu-dist, even though it shouldn't. I added a lower bound to the comparison to fix this problem. Thanks for the help @davydden!
2017-07-31Fix preference for X.Y version when mixed with X.Y.Z versions (#4922)scheibelp1-0/+36
For packages which contain a mix of versions with formats X.Y and X.Y.Z, if the user entered an X.Y version as a preference in packages.yaml, Spack would get confused and favor any version A.B.Z where X=A and Y=B. In the case where there is a mix of these version types, this commit updates preferences so Spack will favor an exact match.
2017-07-31Add latest version of SCons (#4929)Adam J. Stewart1-2/+7
2017-07-31ZeroMQ: C++ Headers (cppzmq) (#4841)Axel Huebl1-0/+40
Adds the cppzmq library, adding a C++ API to ZeroMQ (libzmq). In order to find the autotools-build libzmq, this requires the upcoming cppzmq release (or development branch).
2017-07-31Add missing dependencies to unixodbc (#4928)Adam J. Stewart1-0/+3
2017-07-31Add latest version of expat (#4930)Adam J. Stewart1-1/+3
2017-07-31Add latest version of apr (#4931)Adam J. Stewart1-9/+5
2017-07-31zsh: add variant that skips tcsetpgrp test (#4923)George Hartzell1-0/+16
zsh's configure script fails if there's it tries to test for terminal functionality if there's not a terminal (e.g. in a Jenkins build). The configure script has a switch that asserts that tcsetpgrp works and thereby avoids running that test. This commit adds a variant that invokes that switch, defaulting to True.
2017-07-31gBenchmark: v1.2.0 (#4935)Axel Huebl1-0/+3
Adds a the latest version of gBenchmark, release 1.2.0. This is the first gBenchmark version with proper [CMake config package installs](https://github.com/google/benchmark/issues/363). This is important for dependencies building against it, such as gRPC.
2017-07-28Initial Spackage for qmd-progress library (#4924)Robert Pavel1-0/+62
* Initial Spackage for qmd-progress library PROGRESS is a library is focused on the development of general solvers that are commonly used in quantum chemistry packages. * Removed LA-CC from description to fix formatting * Added Additional Formatting Requests Added requested formatting changes and also ensured that graphlib and mpi are disabled if not enabled
2017-07-28Fix for m4%clang (#4912)sknigh1-0/+3
* Fix for m4%clang * Restricted condition to not subsitute rtlib on OSX
2017-07-27Adding QWT package. (#4911)Jon Rood1-0/+50
* Adding QWT package. * Using builtin file filtering. * Formatting.
2017-07-27bml: fix homepage (#4918)Christoph Junghans1-1/+1
2017-07-27Added Proxy App tag (#4917)Akhil Reddy Patlolla1-0/+1
* Added Proxy App tag * NO changes except proxy app tag
2017-07-27New Package: lcals (#4792)pkondamudi1-0/+122
* New Pacakge: lcals * added logic for arch detection and compiler choice. * fixes for comments. * addressed comments. * removed LCALS_ARCH and added flags though spack. * addressed comments. * flake 8 fix. * reerted the changes along with comments.
2017-07-27Fix for Krell openspeedshop spack package bug. New multi-value variant for ↵Jim Galarowicz1-58/+40
GUI build. (#4880) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file. * Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build. * Fix bad syntax in specifying the boost version range. * Update the version numbers for the krell institute components and tools: cbtf and openspeedshop. * Do not build glib for qt3, it is not needed and causes build problems at this time anyway. * A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. * Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH. * A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. * Trim comments to fit more concisely. * Fix tabs versus spaces and swap if and else clause check from a negative to a positive check. * Fix issues with the cbtf-argonavis build, update to use dyninst-9.3.2, fixes to openspeedshop package build. * Fix issues with the cbtf-argonavis package.py files related to comments. * Add changes for changing the krell packages from Package to CMakePackage. * Add better changes for changing the krell packages from Package to CMakePackage. * Add more modifications for changing the krell packages from Package to CMakePackage. * Add additional modifications for changing the krell packages from Package to CMakePackage and fixing Travis erros * Fix new travis errors. * Fix new travis errors. * Add more changes for PR 4765. * Add more refinements to the conversion from Package to CMakePackage. * Fix new travis errors. * Add dependencies for MPI to be passed to cbtf-krell, so it can build the MPI collectors requested by the builder of openspeedshop. * Remove extra unnecessary routine to adjust build arguments. Fix if-else clause issue. * Fix more flake issues caused by last changes. * Fix a bug where openspeedshop will not build when no mpi variants are specified. Also switch to a multiple level variant for building the gui(s). Use none, qt3, and qt4 as the variants with qt3 being the default. * Add fix for spack issue #4843, where LTDL include files were not found. * Add the build_type variant back into the openspeedshop package file.
2017-07-27New Package: RSbench (#4752)pkondamudi1-0/+66
* New Package: RSbench * minor change * removed tags as per PR# 4749 * addressed comments and added gcc compiler. * added proxy app tags to description. * removed setting CC to pgicc through spec. * removed compiler as depedency * removed pgi variant. * flake 8 fix. * added mpi depedency with pgi compiler * added pgi compiler * removed PGI compiler as depedency. * added tags and addressed other code formattings. * added tags and addressed other code formattings. * addressed comments.
2017-07-27openblas: add 0.2.20 (#4915)Denis Davydov1-0/+1
2017-07-26snptest: new package (#4900)Audrey Thoma1-0/+39
* snptest: new package * fixed version things * fixed install phase
2017-07-26Updated Namespace of BML Repository (#4910)Robert Pavel1-4/+4
2017-07-26added MPI dependency to Nekbone package (#4903)pkondamudi1-0/+5
* removed the tags as per comment in PR# 4749 * addressed above comments * changed fortran compiler. * added proxy application tags. * added tags by removing them from description. * addressed comments * used join_path instead of path concat. * removed the tags as per comment in PR# 4749 * addressed above comments * changed fortran compiler. * added proxy application tags. * added tags by removing them from description. * addressed comments * used join_path instead of path concat. * added tags. * changes to use MPI as depedency. * removed MPI as variant. * changed pointer to filtered makenek file. * flake 8 fix.
2017-07-26shortstack: new package (#4905)Audrey Thoma1-0/+45
2017-07-25Add universal build_type variant to CMakePackage (#4797)Adam J. Stewart45-304/+60
* Add universal build_type variant to CMakePackage * Override build_type in some packages with different possible values * Remove reference to no longer existent debug variant * Update CBTF packages with new build_type variant * Keep note on build size of LLVM
2017-07-25tmux should not set PKG_CONFIG_PATH (#4901)Sam Bateman1-13/+3
* fixes #967 * Version bump to 0.9.1 - Bugfixes for spack find - 0.9.1 can read specs from current develop. * Don't assume spack is in the path when building docs. * Remove PKG_CONFIG_PATH from tmux configure * Change tmux to AutotoolsPackage * Correct link to libtinfo in tmux
2017-07-25fix callpath bug (#4659)becker331-1/+3
* fix callpath bug I found while testing env/cc * fix hanging indent for flake
2017-07-25transdecoder: new package (#4895)Audrey Thoma1-0/+50
* transdecoder: new package * fixed package structure
2017-07-25transposome: new package (#4896)Audrey Thoma1-0/+37
2017-07-25trimgalore: new package (#4899)Audrey Thoma1-0/+44
2017-07-25cleaveland4: new package (#4894)Audrey Thoma3-0/+150
* cleaveland4: new package * fixing return line in viennarna url_for_version
2017-07-25tabix: new package (#4886)Audrey Thoma1-0/+50
* tabix: new package * fixed docs location
2017-07-25sumaclust: new package (#4884)Audrey Thoma1-0/+42
* sumaclust: new package * tweaking url and make specs
2017-07-25Update zstd version (#4873)Jimmy Tang1-4/+2
* Update zstd version * Change order of versions * Use MakefilePackage
2017-07-25Rename the gpu variant to cuda, this is to be consistent with other (#4890)Jimmy Tang1-4/+4
packages.
2017-07-24fix GobjectIntrospection on Darwin (#4872)Denis Davydov1-0/+3
* fix GobjectIntrospection on Darwin * minor
2017-07-24stacks: new package (#4875)Audrey Thoma1-0/+48
2017-07-24added new version of jdk 8u141-b15 (#4876)Stas Sergienko1-0/+2
2017-07-24swarm: new package (#4885)Audrey Thoma1-0/+41
2017-07-24structure: new package (#4879)Audrey Thoma1-0/+47
* structure: new pacakge * fixing package structure (not a pun)
2017-07-24subread: new package (#4882)Audrey Thoma1-0/+52
2017-07-24added new version of cdo (#4877)Stas Sergienko1-0/+2
2017-07-24stringtie: new package (#4878)Audrey Thoma1-0/+41
2017-07-24Change Version formatting properties and functions to return Version objects ↵Adam J. Stewart4-6/+6
(#4834) * Change version.up_to() to return Version() object * Add unit tests for Version.up_to() * Fix packages that expected up_to() to return a string * Ensure that up_to() preserves separator characters * Use version indexing instead of up_to * Make all Version formatting properties return Version objects * Update docs * Tests need to test string representation
2017-07-24Add a py-theano version from git repo (#4871)Jimmy Tang1-0/+1
2017-07-23Add cuda variant for mvapich2. (#4800)健美猫1-2/+13
* Add cuda variant for mvapich2. * Disable cuda for mvapich2 by default.
2017-07-23fix sphinx dependencies, add v1.6.3 (#4870)Stephen McDowell1-2/+13
2017-07-23Perl - allow package activation without PERL5LIB variable (#4540)Milton Woods1-9/+22
* perl: prepend default perl @INC path to support package activation * perl: remove stray comma from list of configure arguments * perl: final comma in configure arguments makes adding arguments safer This reverts commit fdc10cd611f525ebc31ca1953e048095b1c75350. * perl: add comment about modified @INC (thanks to George Hartzell) * perl: use self.prefix.lib and self.prefix.bin for clarity * perl: convert tabs added by editor to spaces for flake8 * perl: use new path syntax: prefix.lib.perl5 * perl: avoid line break before binary operator * perl: use compact spack syntax for perl executable
2017-07-23gBenchmark: Development Package (#4847)Axel Huebl2-51/+15
* gBenchmark: Development Package Add the development version (master branch) of `gBenchmark` * gBenchmark: Remove Duplicate Remove duplicate `gbenchmark` library and keep its patch to remove the shipped -Werror
2017-07-22Make testing spack commands simpler (#4868)Todd Gamblin3-10/+3
Adds SpackCommand class allowing Spack commands to be easily in Python Example usage: from spack.main import SpackCommand info = SpackCommand('info') out, err = info('mpich') print(info.returncode) This allows easier testing of Spack commands. Also: * Simplify command tests * Simplify mocking in command tests. * Simplify module command test * Simplify python command test * Simplify uninstall command test * Simplify url command test * SpackCommand uses more compatible output redirection
2017-07-21Savanna (#4856)Kshitij Mehta1-2/+3
Installing the stable version 0.5 through the checksummed tar.gz does not fetch the git submodule in the package. The submodule appears as an empty directory. Thus, clone the commit tagged as v0.5 using git to get around this issue * savanna: modified adios dependency spec * Replaced adios+staging with adios+flexpath+dataspaces * savanna: Enabling fortran support in adios by default * savanna: reverting to variant 'staging' for enabling all staging transports
2017-07-21sparta: new package (#4867)Audrey Thoma1-0/+46
* sparta: new package * fixing homepage
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-11-06 03:28:31 +0000