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2019-03-06Update kim-api package and add openkim-models-v2 (#10780)Ryan S. Elliott3-27/+65
* Replace kim-api package with kim-api-v2, which has different versions and removes the 'cmake_args' method * Add openkim-models-v2 as an extension package
2019-03-06libelf: move url to fossies.org (#10815)Mark W. Krentel1-4/+10
* libelf: move url to fossies.org Libelf is no longer maintained and the original mr511.de web site no longer exists. The final release, 0.8.13 from Nov 2009 is still archived at fossies.org. Fixes #10757. * Change the homepage to the FSF entry.
2019-03-06added python 2.7.16 (#10805)Gregory Lee1-1/+2
2019-03-06build fixes for util-linux (#10811)Gregory Lee1-7/+2
2019-03-06unifycr: dependency changes and new version (#10722)Cameron Stanavige1-25/+13
New release of UnifyCR. Remove unsupported pre-1.0 versions UnifyCR has had a few dependency changes to make the backend more efficient. A new pre-release version has been released as well to mark these changes. Prior versions are no longer supported.
2019-03-06update package rsem (#10813)Owen Solberg1-0/+1
2019-03-06libusbmuxd: new package (#10726)Isaac Whitfield1-0/+30
2019-03-05intel-parallel-studio package: add version cluster.2019.2 (#10782)健美猞猁1-0/+1
2019-03-05New package: pal (#10766)健美猞猁1-0/+29
2019-03-05New package: erfa (#10763)健美猞猁1-0/+21
2019-03-05NetCDF package: add version 4.6.3 and update naming (#10786)Greg Sjaardema1-3/+11
* Add NetCDF version 4.6.3 * Naming scheme for artifacts >= 4.6.2 has changed. Add a url_for_version function to generate the appropriate URLs
2019-03-05Add fzf utility package (#10778)clellsolomon1-0/+32
* Add fzf utility package * Fix "style checks" errors - var/spack/repos/builtin/packages/fzf/package.py:32: [E226] missing whitespace around arithmetic operator
2019-03-05gcc package: Add 8.3.0 (#10772)Michael Kuhn1-0/+1
2019-03-05openss package: allow all 2.7.x versions (#10807)Gregory Lee1-1/+1
Originally the version constraint range had an upper bound of 2.7.15 This allows all 2.7.x versions
2019-03-05RegCM: intel FC 'hint', 4.7.0 intel warning, fcflags, fix extensions. (#10797)Alberto Chiusole1-14/+63
This should fix and improve #9934, which was messed up by a fetch from develop
2019-03-05various package version updates and build fixes (#10775)Gregory Lee9-6/+80
* various package version updates and build fixes
2019-03-05cantera: make sundials dependency optional (#10764)Matthias Diener1-12/+17
2019-03-05ncl: Add 6.6.2 (#10800)Michael Kuhn1-0/+1
2019-03-05openssl: Add 1.1.1b, 1.1.0j and 1.0.2r (#10779)Michael Kuhn1-1/+4
2019-03-05git-lfs: add version 2.7.1 (#10770)Matthias Diener1-1/+2
2019-03-05seacas: Update NetCDF version requirement (#10787)Greg Sjaardema1-2/+2
Modified NetCDF requirement to allow NetCDF-4.6.2 and subsequent versions.
2019-03-05libbeagle: add 3.1.2 (#10789)Justin Stanley1-6/+4
2019-03-04Header subdirectories for Python and Eigen (#10773)Peter Scheibel2-3/+11
Fixes #10769 This updates the .headers property to include header subdirectories for Python and Eigen (as is recommended by these packages). #10623 updated the default behavior of .headers.directories to exclude subdirectories (since this can cause clashes with system headers). This broke some packages which depended on the old behavior of .headers.directories: for example if you had <package-prefix>/include/subdir/ex1.h, .headers.directories would include <package-prefix>/include/subdir.
2019-03-01Package Updates for ECP CANDLE Supervisor (#10760)Brian Van Essen12-3/+175
* Add EQ-R package * Add Fansi, Pillar, UTF8 (R) packages * Add new versions for py-mdanalysis, r-cli, r-dplyr, r-pkgconfig, r-rlang, r-tibble, stc, and turbine packages * Add hdf5 support for turbine * Specify configure directory for stc package
2019-03-01blast2go: new package at 5.2.5 (#10725)Justin Stanley1-0/+47
* blast2go: new package at 5.2.5 * blast2go: remove redundant url
2019-03-01new package: intel-pin (#10546)Matthias Diener1-0/+23
2019-03-01r-bfastspatial: new package at 0.6.2 (#10734)Justin Stanley1-0/+28
2019-03-01r-bfast: new package at 1.5.7 (#10733)Justin Stanley1-0/+23
2019-03-01bedops: avoid static linking with glibc (#10456)Justin Stanley1-0/+5
2019-03-01blast-legacy: new package at 2.2.26 (#10610)Justin Stanley1-0/+35
* blast-legacy: new package at 2.2.26 * blast-legacy: compile from source * blast-legacy: add missing os.symlink import * blast-legacy: fix build script interpreter
2019-03-01bridger: new package at 2014-12-01 (#10611)Justin Stanley1-0/+31
2019-03-01r-spatial: new package at 7.3-11 (#10728)Justin Stanley1-0/+19
2019-03-01r-nortest: new package at 1.0-4 (#10729)Justin Stanley1-0/+18
2019-03-01r-xts: add 0.11-2 (#10730)Justin Stanley1-1/+2
2019-03-01r-gdalutils: new package at 2.0.1.14 (#10731)Justin Stanley1-0/+23
2019-03-01r-rgdal: add 1.3-9 (#10732)Justin Stanley1-1/+2
2019-03-01hyphy: new package at 2.3.14 (#10759)Justin Stanley1-0/+20
2019-03-01Fix sha256 sum for IOR (#10765)Jiawei Zhuang1-1/+1
2019-02-28petsc: add +knl variantSajid Ali1-1/+5
2019-02-28Trilinos: add release 12.14.1 (#10740)Satish Balay2-3/+3
xsdk: switch from 12.14.0-rc1 to 12.14.1
2019-02-28py-tetoolkit: Add version 2.0.3 (#10749)Eric Martin1-1/+3
2019-02-27git-lfs: patch Makefile for v2.7.0 (#10720)Owen Solberg2-0/+14
Fixes #10702 Same fix merged upstream in git-lfs/git-lfs#3545 -- it may appear in future release v2.7.2 according to package maintainer.
2019-02-27wtdbg2: new package (#10639)Justin Stanley1-0/+20
* wtdbg2: new package at 2.3 * wtdbg2: flake8 fix
2019-02-27mpich: Improve package (#10643)Michael Kuhn1-2/+39
- Add missing pkg-config, libpciaccess and libxml2 dependencies - Add slurm variant for nodelist parsing - Add missing configure flag for libfabric - Unset F90 and F90FLAGS - Allow selecting different PMI interfaces
2019-02-27otf2 package: fix download URL (#10735)Paschalis Korosoglou1-1/+1
2019-02-27Add newer versions for 51 Python packages (#10738)Gregory Lee51-4/+53
2019-02-27Update environment-modules package (#10717)Massimiliano Culpo1-31/+59
The environment modules package has been updated to include versions up to 4.0.0. The url of the package and the homepage have been updated accordingly. The `spack bootstrap` command now builds version 3.2.10 of the environment-modules package, and will do until #10708 is fixed.
2019-02-26new package: libusb (#10682)Isaac Whitfield1-0/+35
2019-02-26new package: libtasn1 (#10681)Isaac Whitfield1-0/+33
2019-02-26QMCPACK package: cuda/hdf5 fixes (#10701)Nichols A. Romero1-4/+8
* Make use of new QE multi-valued HDF5 variant interface * Remove explicit CUDA dependency (which is handled by inheriting from CudaPackage) * Update cuda_arch unset variant check